5OS9 | pdb_00005os9

Structure of the B3 DNA-Binding Domain of NGA1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5os9b_	All beta proteins	DNA-binding pseudobarrel domain	DNA-binding pseudobarrel domain	B3 DNA binding domain	automated matches	Thale cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)
A	d5os9a_	All beta proteins	DNA-binding pseudobarrel domain	DNA-binding pseudobarrel domain	B3 DNA binding domain	automated matches	Thale cress (Arabidopsis thaliana ) [TaxId: 3702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	B3 DNA binding domain	8089659	4003270	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	DNA-binding pseudobarrel domain	8089660	3000213	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	DNA-binding pseudobarrel domain	8089660	3000213	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Chlorophyllase2	e5os9B1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (v294.1)
A	TPR_7, TPR_10, TPR_12, SNAP	e5os9A1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: ADP-ribosylation	T: ADP-ribosylation	F: TPR_7, TPR_10, TPR_12, SNAP	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.330.10	Mainly Beta	Beta Barrel	At1g16640 B3 domain	DNA-binding pseudobarrel domain	CATH (4.3.0)
A	2.40.330.10	Mainly Beta	Beta Barrel	At1g16640 B3 domain	DNA-binding pseudobarrel domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02362	B3 DNA binding domain (B3)	B3 DNA binding domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	B3 domain-containing transcription factor NGA1	transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding nucleic acid binding	developmental process multicellular organismal process regulation of biological process plant organ development regulation of developmental process biological regulation leaf morphogenesis shoot system morphogenesis plant organ morphogenesis multicellular organism development anatomical structure morphogenesis regulation of shoot system morphogenesis anatomical structure development regulation of leaf morphogenesis developmental process multicellular organismal process regulation of biological process plant organ development regulation of developmental process biological regulation leaf morphogenesis shoot system morphogenesis plant organ morphogenesis multicellular organism development anatomical structure morphogenesis regulation of shoot system morphogenesis anatomical structure development regulation of leaf morphogenesis leaf development shoot system development regulation of anatomical structure morphogenesis regulation of plant organ morphogenesis phyllome development system development floral whorl development reproductive system development reproductive process stigma development flower development developmental process involved in reproduction reproductive shoot system development carpel development gynoecium development reproductive structure development post-embryonic development floral organ development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015300	DNA-binding pseudobarrel domain superfamily	Homologous Superfamily
A, B	IPR003340	B3 DNA binding domain	Domain
A, B	IPR044800	B3 domain-containing transcription factor LEC2-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.