Crystal structure of the GroEL mutant A109C in complex with GroES and ADP BeF2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| N | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | GroEL-intermediate domain like | 8032390 | 3001087 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | GroEL equatorial domain-like | 8032389 | 3001651 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | GroEL apical domain-like | 8043929 | 3000963 | SCOP2B (2022-06-29) |
| Z [auth X] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| Y [auth W] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| X [auth V] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| W [auth U] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| V [auth T] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| U [auth S] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| T [auth R] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| S [auth Q] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| R [auth P] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| Q [auth O] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| P [auth 2] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| O [auth 1] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| BA [auth Z] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
| AA [auth Y] | SCOP2B Superfamily | GroES-like | 8002348 | 3000002 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| N | SBP_bac_1 | e5opxN1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| M | SBP_bac_1 | e5opxM1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| L | SBP_bac_1 | e5opxL1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| K | SBP_bac_1 | e5opxK1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| J | SBP_bac_1 | e5opxJ1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| I | SBP_bac_1 | e5opxI1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| H | SBP_bac_1 | e5opxH1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| G | SBP_bac_1 | e5opxG1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| F | SBP_bac_1 | e5opxF1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| E | SBP_bac_1 | e5opxE1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| D | SBP_bac_1 | e5opxD1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| C | SBP_bac_1 | e5opxC1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| B | SBP_bac_1 | e5opxB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| A | SBP_bac_1 | e5opxA1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| Z [auth X] | SBP_bac_1 | e5opxX1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| Y [auth W] | SBP_bac_1 | e5opxW1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| X [auth V] | SBP_bac_1 | e5opxV1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| W [auth U] | SBP_bac_1 | e5opxU1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| V [auth T] | SBP_bac_1 | e5opxT1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| U [auth S] | SBP_bac_1 | e5opxS1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| T [auth R] | SBP_bac_1 | e5opxR1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| S [auth Q] | SBP_bac_1 | e5opxQ1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| R [auth P] | Prenyltransf | e5opxP1 | A: a/b three-layered sandwiches | X: Protein kinase/SAICAR synthase/ATP-grasp | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Undecaprenyl diphosphate synthase | F: Prenyltransf | ECOD (v294.1) |
| Q [auth O] | SBP_bac_1 | e5opxO1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| P [auth 2] | SBP_bac_1 | e5opx21 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| O [auth 1] | SBP_bac_1 | e5opx11 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| BA [auth Z] | SBP_bac_1 | e5opxZ1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
| AA [auth Y] | SBP_bac_1 | e5opxY1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: SBP_bac_1 | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00118 | TCP-1/cpn60 chaperonin family (Cpn60_TCP1) | TCP-1/cpn60 chaperonin family | - | Family | |
| PF00166 | Chaperonin 10 Kd subunit (Cpn10) | Chaperonin 10 Kd subunit | This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR027413 | GroEL-like equatorial domain superfamily | Homologous Superfamily | |
| IPR027410 | TCP-1-like chaperonin intermediate domain superfamily | Homologous Superfamily | |
| IPR001844 | Chaperonin Cpn60/GroEL | Family | |
| IPR018370 | Chaperonin Cpn60, conserved site | Conserved Site | |
| IPR027409 | GroEL-like apical domain superfamily | Homologous Superfamily | |
| IPR002423 | Chaperonin Cpn60/GroEL/TCP-1 family | Family | |
| IPR018369 | Chaperonin GroES, conserved site | Conserved Site | |
| IPR011032 | GroES-like superfamily | Homologous Superfamily | |
| IPR037124 | GroES chaperonin superfamily | Homologous Superfamily | |
| IPR020818 | GroES chaperonin family | Family |














