5OJQ | pdb_00005ojq

The modeled structure of of wild type extended type VI secretion system sheath/tube complex in vibrio cholerae based on cryo-EM reconstruction of the non-contractile sheath/tube complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth a]e5ojqa01 A: Rossmann-likeX: Rossmann-relatedH: FAD/NAD(P)-binding domainT: NopF:ECOD (20:10:01)
B [auth A]e5ojqA01 A: Rossmann-likeX: Rossmann-relatedH: FAD/NAD(P)-binding domainT: NopF:ECOD (20:10:01)
Y [auth R]e5ojqR1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
W [auth P]e5ojqP1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
UA [auth W]e5ojqW1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
U [auth N]e5ojqN1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
SA [auth U]e5ojqU1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
S [auth L]e5ojqL1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
QA [auth S]e5ojqS1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
OA [auth Q]e5ojqQ1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
MA [auth O]e5ojqO1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
KA [auth M]e5ojqM1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
K [auth 6]e5ojq61 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
I [auth 5]e5ojq51 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
G [auth 4]e5ojq41 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
E [auth 3]e5ojq31 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
CA [auth V]e5ojqV1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
C [auth 2]e5ojq21 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
AA [auth T]e5ojqT1 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)
A [auth 1]e5ojq11 A: CRISPR-associated protein Cse2X: CRISPR-associated protein Cse2H: CRISPR-associated protein Cse2T: CRISPR_Cse2F:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05591Type VI secretion system, VipA, VC_A0107 or Hcp2 (T6SS_VipA)Type VI secretion system, VipA, VC_A0107 or Hcp2- Family
PF05943EvpB/VC_A0108, tail sheath N-terminal domain (VipB)EvpB/VC_A0108, tail sheath N-terminal domainEvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB ...EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1].
Domain
PF05943EvpB/VC_A0108, tail sheath N-terminal domain (VipB)EvpB/VC_A0108, tail sheath N-terminal domainEvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB ...EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1].
Domain
PF18945EvpB/VC_A0108, tail sheath gpW/gp25-like domain (VipB_2)EvpB/VC_A0108, tail sheath gpW/gp25-like domainEvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/Vip ...EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell [1]. This entry represents the gpW/gp25-like domain.
Domain
PF05591Type VI secretion system, VipA, VC_A0107 or Hcp2 (T6SS_VipA)Type VI secretion system, VipA, VC_A0107 or Hcp2- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR008312Type VI secretion system sheath protein TssB1Family
IPR010269Type VI secretion system TssC-likeFamily
IPR044032TssC1, C-terminalDomain
IPR044031TssC1, N-terminalDomain
IPR036624Hcp1-like superfamilyHomologous Superfamily
IPR052947T6SS_Hcp1_domainUnknown
IPR008514Type VI secretion system effector HcpDomain