5O7X

CRYSTAL STRUCTURE OF S. CEREVISIAE CORE FACTOR AT 3.2A RESOLUTION

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G, J, M A, D, G, J, M, P	PF20640	Rrn6, helical bundle domain (Rrn6_HB)	Rrn6, helical bundle domain	This is the helical bundle domain (also referred to as the headlock domain) from RNA polymerase I-specific transcription initiation factor Rrn6, a component of a multisubunit transcription factor essential for the initiation of rDNA transcription by ...	This is the helical bundle domain (also referred to as the headlock domain) from RNA polymerase I-specific transcription initiation factor Rrn6, a component of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [1,2]. This is a helical domain found towards the C-terminal, adjacent the beta-propeller, that wraps around Rrn7 and is part of module II of the core factor (CF) [2]. The DNA-bound CF resembles a right hand in which the N-terminal regions of both Rrn11 and Rrn6 (the beta-propeller domain) constitutes the palm, the thumb is composed of the C-terminal of Rrn11 and the fingers and knuckles correspond to Rrn7 and the C-terminal half of Rrn6 (this domain), respectively [3].	Domain
A, D, G, J, M A, D, G, J, M, P	PF20639	RRN6, K-rich C-terminal domain (Rrn6_K-rich)	RRN6, K-rich C-terminal domain	This is the C-terminal K-rich domain from RNA polymerase I-specific transcription initiation factor Rrn6 [1]. Rrn6 is a component of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [1,2].	Domain
A, D, G, J, M A, D, G, J, M, P	PF10214	Rrn6, beta-propeller (Rrn6_beta-prop)	Rrn6, beta-propeller	-	Repeat
B, E, H, K, N B, E, H, K, N, Q	PF20645	Rrn7/TAF1B, C-terminal cyclin domain (Rrn7_cyclin_C)	Rrn7/TAF1B, C-terminal cyclin domain	Rrn7 from yeast and its orthologue TATA box-binding protein-associated factor RNA polymerase I subunit B (TAF1B) from human, are TFIIB-like factors components of RNA polymerase I core factor complex. They contain two cyclin fold domains. In Rrn7 the ...	Rrn7 from yeast and its orthologue TATA box-binding protein-associated factor RNA polymerase I subunit B (TAF1B) from human, are TFIIB-like factors components of RNA polymerase I core factor complex. They contain two cyclin fold domains. In Rrn7 the cyclin domains interact with both Rrn6 and Rrn11 and form the fingers of the core factor which resembles a right hand. N-terminal regions of both Rrn11 and Rrn6 compose the palm, the thumb is composed by the C-terminal of Rrn11 and the knuckles consist of the C-terminal half of Rrn6. This is the C-terminal cyclin domain of Rrn7 from yeast and the orthologues from animals and plants TAF1B [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G, J, M A, D, G, J, M, P	RNA polymerase I-specific transcription initiation factor RRN6	transcription factor binding protein binding binding RNA polymerase I general transcription initiation factor binding general transcription initiation factor binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding RNA polymerase I transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process metabolic process cellular process macromolecule metabolic process transcription initiation at RNA polymerase I promoter DNA-templated transcription initiation	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex RNA polymerase I core factor complex nucleus membrane-enclosed lumen nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle protein-containing complex RNA polymerase I core factor complex nucleus membrane-enclosed lumen nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle RNA polymerase I transcription regulator complex organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle
B, E, H, K, N B, E, H, K, N, Q	RNA polymerase I-specific transcription initiation factor RRN7	DNA binding sequence-specific DNA binding binding double-stranded DNA binding core promoter sequence-specific DNA binding nucleic acid binding RNA polymerase I core promoter sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding RNA polymerase I transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding transcription factor binding protein binding DNA binding sequence-specific DNA binding binding double-stranded DNA binding core promoter sequence-specific DNA binding nucleic acid binding RNA polymerase I core promoter sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding RNA polymerase I transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding transcription factor binding protein binding TBP-class protein binding general transcription initiation factor binding cation binding ion binding metal ion binding small molecule binding	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex RNA polymerase I core factor complex nuclear protein-containing complex transcription regulator complex RNA polymerase I transcription regulator complex
C, F, I, L, O C, F, I, L, O, R	RNA polymerase I-specific transcription initiation factor RRN11	general transcription initiation factor activity RNA polymerase I general transcription initiation factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding core promoter sequence-specific DNA binding nucleic acid binding RNA polymerase I core promoter sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding RNA polymerase I transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding general transcription initiation factor activity RNA polymerase I general transcription initiation factor activity DNA binding sequence-specific DNA binding binding double-stranded DNA binding core promoter sequence-specific DNA binding nucleic acid binding RNA polymerase I core promoter sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding organic cyclic compound binding RNA polymerase I transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding transcription factor binding protein binding TBP-class protein binding general transcription initiation factor binding	cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process organic substance metabolic process transcription by RNA polymerase I rRNA transcription organic substance biosynthetic process rRNA metabolic process nucleolar large rRNA transcription by RNA polymerase I cellular metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex RNA polymerase I core factor complex nuclear protein-containing complex transcription regulator complex RNA polymerase I transcription regulator complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G, J, M A, D, G, J, M, P	IPR048535	RRN6, beta-propeller	Domain
A, D, G, J, M A, D, G, J, M, P	IPR016531	RNA polymerase I-specific transcription initiation factor Rrn6	Family
A, D, G, J, M A, D, G, J, M, P	IPR048536	RRN6, K-rich C-terminal domain	Domain
A, D, G, J, M A, D, G, J, M, P	IPR048537	RRN6, helical bundle domain	Domain
A, D, G, J, M A, D, G, J, M, P	IPR019350	RNA polymerase I-specific transcription initiation factor RRN6-like	Family
B, E, H, K, N B, E, H, K, N, Q	IPR033599	RNA polymerase I transcription initiation factor TAF1B/Rrn7	Family
B, E, H, K, N B, E, H, K, N, Q	IPR048540	Rrn7/TAF1B, N-terminal cyclin domain	Domain
B, E, H, K, N B, E, H, K, N, Q	IPR048538	Rrn7/TAF1B, C-terminal cyclin domain	Domain
B, E, H, K, N B, E, H, K, N, Q	IPR021752	Transcription initiation factor Rrn7, Zinc-finger	Domain
C, F, I, L, O C, F, I, L, O, R	IPR007224	Transcription initiation factor Rrn11	Family
C, F, I, L, O C, F, I, L, O, R	IPR016850	Transcription initiation factor Rrn11, budding yeast	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.