Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilySNARE-like8082715 3001113 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)
K [auth M]SCOP2B SuperfamilyRas-like P-loop GTPases8089854 3002022 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00400e5nzrA2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
APF04053e5nzrA1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF04053ECOD (1.6)
APF04053e5nzrA3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF04053ECOD (1.6)
BPF07718e5nzrB2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07718ECOD (1.6)
BPF01602e5nzrB3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF01602ECOD (1.6)
BPF14806e5nzrB1 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: PF14806ECOD (1.6)
E [auth F]PF00025e5nzrF1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00025ECOD (1.6)
G [auth R]PF00025e5nzrR1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00025ECOD (1.6)
K [auth M]PF00025e5nzrM1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00025ECOD (1.6)
I [auth K]PF08752e5nzrK2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08752ECOD (1.6)
I [auth K]PF01602e5nzrK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF01602ECOD (1.6)
I [auth K]PF16381e5nzrK3 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: PF16381ECOD (1.6)
F [auth G]PF08752e5nzrG2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF08752ECOD (1.6)
F [auth G]PF01602e5nzrG1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF01602ECOD (1.6)
F [auth G]PF16381e5nzrG3 A: a+b two layersX: TBP-likeH: Subdomain of clathrin and coatomer appendage domain (From Topology)T: Subdomain of clathrin and coatomer appendage domainF: PF16381ECOD (1.6)
H [auth Z]PF01217e5nzrZ1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF01217ECOD (1.6)
J [auth L]PF01217e5nzrL1 A: a+b three layersX: Profilin-likeH: profilin-like (From Topology)T: profilin-likeF: PF01217ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04053Coatomer WD associated region (Coatomer_WDAD)Coatomer WD associated region- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
PF14806Coatomer beta subunit appendage platform (Coatomer_b_Cpla)Coatomer beta subunit appendage platformThis family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan.Domain
PF04053Coatomer WD associated region (Coatomer_WDAD)Coatomer WD associated region- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chain- Domain
E [auth F],
G [auth R],
K [auth M]
PF00025ADP-ribosylation factor family (Arf)ADP-ribosylation factor familyPfam combines a number of different Prosite families togetherDomain
F [auth G],
I [auth K]
PF16381Coatomer subunit gamma-1 C-terminal appendage platform (Coatomer_g_Cpla)Coatomer subunit gamma-1 C-terminal appendage platformCoatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 ...Coatomer_g_Cpla is the very C-terminal domain of the eukaryotic Coatomer subunit gamma-1 proteins. It acts as a platform domain to the C-terminal appendage. It carries one single protein/protein interaction site, which is the binding site for ARFGAP2 or ADP-ribosylation factor GTPase-activating protein. COPI-coated vesicles mediate retrograde transport from the Golgi back to the ER and intra-Golgi transport. The gamma-COPI is part of one of two subcomplexes that make up the heptameric coatomer complex along with the beta, delta and zeta subunits [1].
Domain
F [auth G],
I [auth K]
PF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Repeat
F [auth G],
I [auth K]
PF08752Coatomer gamma subunit appendage platform subdomain (COP-gamma_platf)Coatomer gamma subunit appendage platform subdomainCOPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at U ...COPI-coated vesicles function in retrograde transport from the Golgi to the ER, and in intra-Golgi transport. This is the platform subdomain of the coatomer gamma subunit appendage domain. It carries a protein-protein interaction site at UniProt:P53620, residue W776, which in yeast binds to the ARFGAP Glo3p, and in mammalian gamma-COP binds to a Glo3p orthologue, ARFGAP2 [1].
Domain
H [auth Z],
J [auth L]
PF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Coatomer subunit alpha
Coatomer subunit beta
Coatomer subunit beta'
Coatomer subunit delta-
E [auth F],
G [auth R],
K [auth M]
ADP-ribosylation factor 1
F [auth G],
I [auth K]
Coatomer subunit gamma-1
H [auth Z],
J [auth L]
Coatomer subunit zeta-1-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019775WD40 repeat, conserved siteConserved Site
IPR016391Coatomer subunit alphaFamily
IPR010714Coatomer, alpha subunit, C-terminalDomain
IPR047312Coatomer subunit alpha, WD Associated RegionDomain
IPR011048Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamilyHomologous Superfamily
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR006692Coatomer, WD associated regionDomain
IPR001680WD40 repeatRepeat
IPR020472G-protein beta WD-40 repeatRepeat
IPR016460Coatomer beta subunit (COPB1)Family
IPR016024Armadillo-type foldHomologous Superfamily
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
IPR011710Coatomer beta subunit, C-terminalDomain
IPR029446Coatomer beta subunit, appendage platform domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR016453Coatomer beta' subunit (COPB2)Family
IPR006692Coatomer, WD associated regionDomain
IPR001680WD40 repeatRepeat
IPR020472G-protein beta WD-40 repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR011012Longin-like domain superfamilyHomologous Superfamily
IPR027059Coatomer delta subunitFamily
IPR022775AP complex, mu/sigma subunitDomain
IPR036168AP-2 complex subunit mu, C-terminal superfamilyHomologous Superfamily
IPR028565Mu homology domainDomain
E [auth F],
G [auth R],
K [auth M]
IPR045872ADP-ribosylation factor 1-5Family
E [auth F],
G [auth R],
K [auth M]
IPR005225Small GTP-binding protein domainDomain
E [auth F],
G [auth R],
K [auth M]
IPR006689Small GTPase superfamily, ARF/SAR typeFamily
E [auth F],
G [auth R],
K [auth M]
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
F [auth G],
I [auth K]
IPR016024Armadillo-type foldHomologous Superfamily
F [auth G],
I [auth K]
IPR002553Clathrin/coatomer adaptor, adaptin-like, N-terminalDomain
F [auth G],
I [auth K]
IPR013040Coatomer, gamma subunit, appendage, Ig-like subdomainDomain
F [auth G],
I [auth K]
IPR013041Clathrin adaptor, appendage, Ig-like subdomain superfamilyHomologous Superfamily
F [auth G],
I [auth K]
IPR011989Armadillo-like helicalHomologous Superfamily
F [auth G],
I [auth K]
IPR032154Coatomer subunit gamma, C-terminalDomain
F [auth G],
I [auth K]
IPR017106Coatomer gamma subunitFamily
F [auth G],
I [auth K]
IPR037067Coatomer, gamma subunit, appendage domain superfamilyHomologous Superfamily
F [auth G],
I [auth K]
IPR012295TBP domain superfamilyHomologous Superfamily
F [auth G],
I [auth K]
IPR009028Coatomer/calthrin adaptor appendage, C-terminal subdomainHomologous Superfamily
H [auth Z],
J [auth L]
IPR000804Clathrin adaptor complex, small chainConserved Site
H [auth Z],
J [auth L]
IPR022775AP complex, mu/sigma subunitDomain
H [auth Z],
J [auth L]
IPR039652Coatomer subunit zetaFamily
H [auth Z],
J [auth L]
IPR011012Longin-like domain superfamilyHomologous Superfamily