5NRT | pdb_00005nrt

Cys-Gly dipeptidase GliJ in complex with Ca2+

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Metallo-dependent hydrolases	8077847	3000428	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5nrtA1	A: Repetitive alpha hairpins	X: Nucleotidyltransferase	H: Nucleotidyltransferase	T: Plexin_RBD	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01244	Membrane dipeptidase (Peptidase family M19) (Peptidase_M19)	Membrane dipeptidase (Peptidase family M19)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Dipeptidase gliJ	peptidase activity catalytic activity, acting on a protein hydrolase activity exopeptidase activity dipeptidase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding metallodipeptidase activity metallopeptidase activity metalloexopeptidase activity	mycotoxin metabolic process secondary metabolite biosynthetic process biosynthetic process mycotoxin biosynthetic process metabolic process cellular process toxin biosynthetic process toxin metabolic process secondary metabolic process gliotoxin biosynthetic process sulfur compound biosynthetic process sulfur compound metabolic process proteolysis primary metabolic process mycotoxin metabolic process secondary metabolite biosynthetic process biosynthetic process mycotoxin biosynthetic process metabolic process cellular process toxin biosynthetic process toxin metabolic process secondary metabolic process gliotoxin biosynthetic process sulfur compound biosynthetic process sulfur compound metabolic process proteolysis primary metabolic process protein metabolic process macromolecule metabolic process symbiont-mediated perturbation of host defense response symbiont-mediated suppression of host immune response biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host immune response modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008257	Peptidase M19	Family
A	IPR032466	Metal-dependent hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.