5NPW
Structure of human ATG5-ATG16L1(ATG5BD) complex (C2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ubiquitin-like | 8090297 | 3000157 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ubiquitin-like | 8090298 | 3000157 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | ATG16 helical segment-like | 8090299 | 3002426 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF20637 | e5npwC3 | A: alpha bundles | X: Helical domain in autophagy protein 5 (From Topology) | H: Helical domain in autophagy protein 5 (From Topology) | T: Helical domain in autophagy protein 5 | F: PF20637 | ECOD (1.6) |
C | PF04106 | e5npwC2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF04106 | ECOD (1.6) |
C | PF20638 | e5npwC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF20638 | ECOD (1.6) |
E | PF20637 | e5npwE3 | A: alpha bundles | X: Helical domain in autophagy protein 5 (From Topology) | H: Helical domain in autophagy protein 5 (From Topology) | T: Helical domain in autophagy protein 5 | F: PF20637 | ECOD (1.6) |
E | PF04106 | e5npwE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF04106 | ECOD (1.6) |
E | PF20638 | e5npwE2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF20638 | ECOD (1.6) |
A | PF20637 | e5npwA3 | A: alpha bundles | X: Helical domain in autophagy protein 5 (From Topology) | H: Helical domain in autophagy protein 5 (From Topology) | T: Helical domain in autophagy protein 5 | F: PF20637 | ECOD (1.6) |
A | PF04106 | e5npwA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF04106 | ECOD (1.6) |
A | PF20638 | e5npwA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF20638 | ECOD (1.6) |
G | PF20637 | e5npwG1 | A: alpha bundles | X: Helical domain in autophagy protein 5 (From Topology) | H: Helical domain in autophagy protein 5 (From Topology) | T: Helical domain in autophagy protein 5 | F: PF20637 | ECOD (1.6) |
G | PF04106 | e5npwG3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF04106 | ECOD (1.6) |
G | PF20638 | e5npwG2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF20638 | ECOD (1.6) |
B | F_UNCLASSIFIED | e5npwB1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e5npwD1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e5npwF1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H | F_UNCLASSIFIED | e5npwH1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20637 | Autophagy protein ATG5, alpha-helical bundle region (ATG5_HBR) | Autophagy protein ATG5, alpha-helical bundle region | Autophagy protein ATG5 is involved in autophagic vesicle formation. It is conjugated with ATG12, acting as an E3-like ubiquitin enzyme required for lipidation of ATG8 family proteins and their association to the vesicle membranes. ATG5 comprises two ... | Domain | |
PF20638 | Autophagy protein ATG5, UblA domain (ATG5_UblA) | Autophagy protein ATG5, UblA domain | This is the N-terminal ubiquitin-like domain, termed UblA, from autophagy protein ATG5 [1,2]. ATG5 comprises two ubiquitin-like domains (UblA and UblB) that flank a helix-rich domain (HBR). Both UblA and UblB comprise a five-stranded sheet and two-he ... | Domain | |
PF04106 | Autophagy protein ATG5, UblB domain (ATG5_UblB) | Autophagy protein ATG5, UblB domain | ATG5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway [1]. ATG5 is conjugated to ATG12; this conjugate exhibits E3 ligase-like activity which facilitates the lipidation of members of the LC3 famil ... | Domain | |
PF08614 | Autophagy protein 16 (ATG16) (ATG16) | Autophagy protein 16 (ATG16) | - | Coiled-coil |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR048318 | Autophagy protein ATG5, UblB domain | Domain | |
IPR007239 | Autophagy-related protein 5 | Family | |
IPR042526 | Autophagy protein Atg5, helix rich domain | Homologous Superfamily | |
IPR048939 | Autophagy protein ATG5, UblA domain | Domain | |
IPR042527 | Autophagy protein Atg5, UblA domain superfamily | Homologous Superfamily | |
IPR048940 | Autophagy protein ATG5, alpha-helical bundle region | Domain | |
IPR045160 | Autophagy-related protein 16 | Family | |
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR013923 | Autophagy-related protein 16 domain | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR020472 | G-protein beta WD-40 repeat | Repeat |