Crystal structure of malate dehydrogenase from Plasmodium falciparum (PfMDH)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| P | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | LDH/MDH-like | 8059749 | 4000045 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | LDH/MDH/AglA-like | 8059750 | 3000039 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| P | UQ_con | e5nfrP1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| O | UQ_con | e5nfrO1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| N | UQ_con | e5nfrN1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| M | UQ_con | e5nfrM1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| L | UQ_con | e5nfrL1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| K | UQ_con | e5nfrK1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| J | UQ_con | e5nfrJ1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| I | UQ_con | e5nfrI1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| H | UQ_con | e5nfrH1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| G | UQ_con | e5nfrG1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| F | UQ_con | e5nfrF1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| E | UQ_con | e5nfrE1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| D | UQ_con | e5nfrD1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| C | UQ_con | e5nfrC1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| B | UQ_con | e5nfrB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: UQ_con | ECOD (v294.1) |
| A | Pkinase | e5nfrA1 | A: a/b three-layered sandwiches | X: Protein kinase/SAICAR synthase/ATP-grasp | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02866 | lactate/malate dehydrogenase, alpha/beta C-terminal domain (Ldh_1_C) | lactate/malate dehydrogenase, alpha/beta C-terminal domain | L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ... | Domain | |
| PF00056 | lactate/malate dehydrogenase, NAD binding domain (Ldh_1_N) | lactate/malate dehydrogenase, NAD binding domain | L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001236 | Lactate/malate dehydrogenase, N-terminal | Domain | |
| IPR036291 | NAD(P)-binding domain superfamily | Homologous Superfamily | |
| IPR011275 | Malate dehydrogenase, type 3 | Family | |
| IPR015955 | Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | Homologous Superfamily | |
| IPR022383 | Lactate/malate dehydrogenase, C-terminal | Domain | |
| IPR001557 | L-lactate/malate dehydrogenase | Family |














