5N6U
Crystal structure of Beta-D-Mannosidase from Dictyoglomus thermophilum.
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | PF22666 | e5n6uA2 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF22666 | ECOD (1.6) |
| A | PF00703 | e5n6uA4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
| A | PF17753 | e5n6uA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17753 | ECOD (1.6) |
| A | PF17786 | e5n6uA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17786 | ECOD (1.6) |
| A | PF02836 | e5n6uA5 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
| B | PF22666 | e5n6uB2 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF22666 | ECOD (1.6) |
| B | PF00703 | e5n6uB4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
| B | PF17753 | e5n6uB3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17753 | ECOD (1.6) |
| B | PF17786 | e5n6uB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17786 | ECOD (1.6) |
| B | PF02836 | e5n6uB5 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
| C | PF22666 | e5n6uC5 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF22666 | ECOD (1.6) |
| C | PF00703 | e5n6uC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
| C | PF17753 | e5n6uC4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17753 | ECOD (1.6) |
| C | PF17786 | e5n6uC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17786 | ECOD (1.6) |
| C | PF02836 | e5n6uC3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
| D | PF22666 | e5n6uD5 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF22666 | ECOD (1.6) |
| D | PF00703 | e5n6uD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF00703 | ECOD (1.6) |
| D | PF17753 | e5n6uD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17753 | ECOD (1.6) |
| D | PF17786 | e5n6uD4 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF17786 | ECOD (1.6) |
| D | PF02836 | e5n6uD3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF02836 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
| A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
| B | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
| B | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
| C | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
| C | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
| D | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (4.3.0) |
| D | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02836 | Glycosyl hydrolases family 2, TIM barrel domain (Glyco_hydro_2_C) | Glycosyl hydrolases family 2, TIM barrel domain | This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | Domain | |
| PF00703 | Glycosyl hydrolases family 2 (Glyco_hydro_2) | Glycosyl hydrolases family 2 | This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | Domain | |
| PF02837 | Glycosyl hydrolases family 2, sugar binding domain (Glyco_hydro_2_N) | Glycosyl hydrolases family 2, sugar binding domain | This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction. | Domain | |
| PF17753 | Ig-fold domain (Ig_mannosidase) | Ig-fold domain | This Ig-like fold domain is found in mannosidase enzymes [1]. | Domain | |
| PF17786 | Mannosidase Ig/CBM-like domain (Mannosidase_ig) | Mannosidase Ig/CBM-like domain | This domain corresponds to domain 4 in the structure of Bacteroides thetaiotaomicron beta-mannosidase, BtMan2A [1]. This domain has an Ig-like fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Beta-mannosidase |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036156 | Beta-Galactosidase/glucuronidase domain superfamily | Homologous Superfamily | |
| IPR006104 | Glycosyl hydrolases family 2, sugar binding domain | Domain | |
| IPR041447 | Mannosidase Ig/CBM-like domain | Domain | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR006103 | Glycoside hydrolase family 2, catalytic domain | Domain | |
| IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
| IPR041625 | Beta-mannosidase, Ig-fold domain | Domain | |
| IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
| IPR006102 | Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich | Domain |
