5N5F | pdb_00005n5f

Crystal structure of Haliangium ochraceum encapsulated ferritin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J	d5n5fj_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
I	d5n5fi_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
H	d5n5fh_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
G	d5n5fg_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
F	d5n5ff_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
E	d5n5fe_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
D	d5n5fd_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
C	d5n5fc_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
B	d5n5fb_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)
A	d5n5fa_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Haliangium ochraceum ) [TaxId: 80816 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8086902	3001658	SCOP2B (2022-06-29)
A	SCOP2 Family	half-ferritin	8086901	4001224	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ferritin-like	8086902	3001658	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	UQ_con	e5n5fJ1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
I	UQ_con	e5n5fI1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
H	UQ_con	e5n5fH1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
G	UQ_con	e5n5fG1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
F	UQ_con	e5n5fF1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
E	UQ_con	e5n5fE1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
D	UQ_con	e5n5fD1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
C	UQ_con	e5n5fC1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)
B	Gal-bind_lectin	e5n5fB1	A: a/b three-layered sandwiches	X: Protein kinase/SAICAR synthase/ATP-grasp	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: Gal-bind_lectin	ECOD (v294.1)
A	UQ_con	e5n5fA1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: UQ_con	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
I	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
H	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
G	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
F	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
E	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
D	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
C	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
B	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)
A	6.10.140.1960	Special	Helix non-globular	Helix Hairpins		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF22277	EncFtn-like (EncFtn-like)	EncFtn-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	encapsulated ferritin	oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR030907	Encapsulin-associated ferritin-like	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR054581	Encapsulated ferritin-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.