5MWF | pdb_00005mwf

Human Jagged2 C2-EGF2

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UCR_6-4kD	e5mwfA1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: UCR_6-4kD	ECOD (v294.1)
B	UCR_6-4kD	e5mwfB1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: UCR_6-4kD	ECOD (v294.1)
C	UCR_6-4kD	e5mwfC1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: UCR_6-4kD	ECOD (v294.1)
E	UCR_6-4kD	e5mwfE1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: UCR_6-4kD	ECOD (v294.1)
F	UCR_6-4kD	e5mwfF1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: UCR_6-4kD	ECOD (v294.1)
D	UCR_6-4kD	e5mwfD1	A: a/b three-layered sandwiches	X: HAD domain-like	H: The swivelling beta/beta/alpha domain	T: The swivelling beta/beta/alpha domain	F: UCR_6-4kD	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.3510	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
B	2.60.40.3510	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
C	2.60.40.3510	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
E	2.60.40.3510	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
F	2.60.40.3510	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
D	2.60.40.3510	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01414	Delta serrate ligand (DSL)	Delta serrate ligand	This family has been redefined to correspond to the EGF-like domain defined by structure.	Domain
A, B, C, D, E A, B, C, D, E, F	PF07657	N terminus of Notch ligand C2-like domain (MNNL)	N terminus of Notch ligand C2-like domain	This entry represents a region of conserved sequence at the N terminus of several Notch ligand proteins. The entry has been extended to correspond to the C2-like domain defined by the protein structure.	Domain
A, B, C, D, E A, B, C, D, E, F	PF21700	Delta-like/Jagged, EGF-like domain (EGF_DL_JAG)	Delta-like/Jagged, EGF-like domain	This entry represents a EGF-like domain found in delta-like, jagged and Wnt inhibitory factor 1, which are involved in different signalling pathways [1-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Protein jagged-2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding signaling receptor binding Notch binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding signaling receptor binding Notch binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity	regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of biological process cell adhesion regulation of cellular process regulation of cell adhesion biological regulation cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process cell differentiation anatomical structure morphogenesis odontogenesis of dentin-containing tooth odontogenesis anatomical structure development animal organ development animal organ morphogenesis multicellular organism development multicellular organismal process skeletal system development system development gamma-delta T cell activation hemopoiesis cell activation cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation gamma-delta T cell differentiation T cell activation immune system process T cell differentiation leukocyte differentiation embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development morphogenesis of embryonic epithelium epithelium development embryonic morphogenesis morphogenesis of an epithelium tissue development tissue morphogenesis system process respiratory system process respiratory gaseous exchange by respiratory system thymic T cell selection T cell differentiation in thymus T cell selection apoptotic process involved in morphogenesis secondary palate development cell death epithelial cell apoptotic process epithelial cell apoptotic process involved in palatal shelf morphogenesis apoptotic process involved in development apoptotic process roof of mouth development programmed cell death cell population proliferation regulation of cell population proliferation cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of signaling cell surface receptor signaling pathway Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication positive regulation of Notch signaling pathway positive regulation of signaling sensory organ development epidermis development epithelial cell differentiation hair cell differentiation auditory receptor cell fate commitment neurogenesis neuron differentiation inner ear development mechanoreceptor differentiation epidermal cell differentiation ear development inner ear receptor cell fate commitment neuron fate commitment inner ear auditory receptor cell differentiation nervous system development inner ear receptor cell differentiation generation of neurons cell fate commitment	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR001007	VWFC domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR026219	Jagged/Serrate protein	Family
A, B, C, D, E A, B, C, D, E, F	IPR056986	Protein jagged-1/2, predicted ferredoxin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR001774	Delta/Serrate/lag-2 (DSL) protein	Domain
A, B, C, D, E A, B, C, D, E, F	IPR013032	EGF-like, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR000742	EGF-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR011651	Notch ligand, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001881	EGF-like calcium-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q9Y219	glioblastoma breast cancer giant cell glioblastoma lung lymphangioleiomyomatosis syndactyly breast carcinoma Craniofacial Abnormalities pancreatic ductal adenocarcinoma schizophrenia malignant ependymoma non-syndromic syndactyly polysyndactyly 4 lymphangioleiomyomatosis malignant mesothelioma ovarian cancer glioblastoma breast cancer giant cell glioblastoma lung lymphangioleiomyomatosis syndactyly breast carcinoma Craniofacial Abnormalities pancreatic ductal adenocarcinoma schizophrenia malignant ependymoma non-syndromic syndactyly polysyndactyly 4 lymphangioleiomyomatosis malignant mesothelioma ovarian cancer psoriasis limb-girdle muscular dystrophy malignant colon neoplasm medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.