5MVI
Crystal structure of 2-methylcitrate dehydratase (PrpD) from Salmonella enterica
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth A] | d5mvia_ | Multi-domain proteins (alpha and beta) | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | automated matches | (Salmonella enterica ) [TaxId: 28901 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF03972 | e5mviE1 | A: alpha arrays | X: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | H: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | T: alpha-helical domain in 2-methylcitrate dehydratase PrpD | F: PF03972 | ECOD (1.6) |
B [auth D] | PF03972 | e5mviD1 | A: alpha arrays | X: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | H: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | T: alpha-helical domain in 2-methylcitrate dehydratase PrpD | F: PF03972 | ECOD (1.6) |
C [auth A] | PF03972 | e5mviA1 | A: alpha arrays | X: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | H: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | T: alpha-helical domain in 2-methylcitrate dehydratase PrpD | F: PF03972 | ECOD (1.6) |
C [auth A] | PF19305 | e5mviA2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Serine dehydratase beta chain-like (From Topology) | T: Serine dehydratase beta chain-like | F: PF19305 | ECOD (1.6) |
D [auth B] | PF03972 | e5mviB1 | A: alpha arrays | X: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | H: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | T: alpha-helical domain in 2-methylcitrate dehydratase PrpD | F: PF03972 | ECOD (1.6) |
E [auth C] | PF03972 | e5mviC1 | A: alpha arrays | X: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | H: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | T: alpha-helical domain in 2-methylcitrate dehydratase PrpD | F: PF03972 | ECOD (1.6) |
F | PF03972 | e5mviF1 | A: alpha arrays | X: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | H: alpha-helical domain in 2-methylcitrate dehydratase PrpD (From Topology) | T: alpha-helical domain in 2-methylcitrate dehydratase PrpD | F: PF03972 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth E] | 1.10.4100.10 | Mainly Alpha | Orthogonal Bundle | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | CATH (utative) |
B [auth D] | 1.10.4100.10 | Mainly Alpha | Orthogonal Bundle | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | CATH (utative) |
C [auth A] | 1.10.4100.10 | Mainly Alpha | Orthogonal Bundle | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | CATH (4.3.0) |
C [auth A] | 3.30.1330.120 | Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30 | Chain: A | CATH (4.3.0) |
D [auth B] | 1.10.4100.10 | Mainly Alpha | Orthogonal Bundle | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | CATH (utative) |
E [auth C] | 1.10.4100.10 | Mainly Alpha | Orthogonal Bundle | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | CATH (utative) |
F | 1.10.4100.10 | Mainly Alpha | Orthogonal Bundle | 2-methylcitrate dehydratase PrpD | 2-methylcitrate dehydratase PrpD | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19305 | MmgE/PrpD C-terminal domain (MmgE_PrpD_C) | MmgE/PrpD C-terminal domain | This entry represents the C-terminal domain of 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyses the third step of the 2-methylcitric acid cycle. This domain is related to the serine dehydratase b ... | Domain | |
PF03972 | MmgE/PrpD N-terminal domain (MmgE_PrpD_N) | MmgE/PrpD N-terminal domain | This entry represents the N-terminal domain of 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyses the third step of the 2-methylcitric acid cycle [1]. This enzyme consists of two domains: a large d ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036148 | MmgE/PrpD superfamily | Homologous Superfamily | |
IPR012705 | 2-methylcitrate dehydratase PrpD | Family | |
IPR005656 | MmgE/PrpD | Family | |
IPR042188 | MmgE/PrpD superfamily, domain 2 | Homologous Superfamily | |
IPR042183 | MmgE/PrpD superfamily, domain 1 | Homologous Superfamily | |
IPR045337 | MmgE/PrpD, C-terminal | Domain | |
IPR045336 | MmgE/PrpD, N-terminal | Domain |