5MJE

Crystal structure of the HigB2 toxin in complex with Nb8

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5mjeb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Bd5mjeb2 Artifacts Tags Tags Tags C-terminal Tags (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF06296e5mjeA1 A: a+b two layersX: RelE-likeH: RelE-like (From Topology)T: RelE-likeF: PF06296ECOD (1.6)
BPF07686e5mjeB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Heavy ChainIGHV1 -cytotoxic translational repressor of toxin-antitoxinstability system SAbDab (2024-04-26)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06296RelE toxin of RelE / RelB toxin-antitoxin system (RelE)RelE toxin of RelE / RelB toxin-antitoxin systemRelE is a family of Gram-negative bacterial antitoxins of the RelE/RelB toxin-antitoxin system. Its cognate antitoxin is family RelB, Pfam:PF04221.Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR009387Toxin HigB-2Family