5MEB | pdb_00005meb

Crystal structure of yeast Cdt1 C-terminal domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	HTH_CDT1	e5mebB1	A: a/b three-layered sandwiches	X: Beta domain of coronavirus spike glycoprotein	H: HAMP domain	T: Polymerase basic protein 2 cap-binding domain	F: HTH_CDT1	ECOD (v294.1)
A	CDT1_C	e5mebA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: CDT1_C	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF16679	DNA replication factor Cdt1 C-terminal domain (CDT1_C)	DNA replication factor Cdt1 C-terminal domain	This is the C-terminal domain of DNA replication factor Cdt1. This domain binds the MCM complex [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Cell division cycle protein CDT1	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding binding nucleic acid binding DNA replication origin binding	pre-replicative complex assembly nuclear DNA replication cell cycle DNA replication nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization cellular component assembly protein-containing complex assembly cell cycle cellular component organization or biogenesis cell cycle process pre-replicative complex assembly involved in nuclear cell cycle DNA replication DNA-templated DNA replication pre-replicative complex assembly nuclear DNA replication cell cycle DNA replication nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis protein-DNA complex organization cellular component assembly protein-containing complex assembly cell cycle cellular component organization or biogenesis cell cycle process pre-replicative complex assembly involved in nuclear cell cycle DNA replication DNA-templated DNA replication protein-containing complex organization primary metabolic process pre-replicative complex assembly involved in cell cycle DNA replication protein-DNA complex assembly DNA metabolic process nucleic acid metabolic process DNA replication metabolic process cellular process macromolecule metabolic process cell division regulation of DNA-templated DNA replication initiation regulation of biological process regulation of cellular process DNA replication initiation biological regulation regulation of macromolecule metabolic process regulation of primary metabolic process regulation of DNA-templated DNA replication regulation of nucleobase-containing compound metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA recombination double-strand break repair via break-induced replication cellular response to stress DNA damage response response to stress recombinational repair double-strand break repair via homologous recombination DNA repair	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex protein-DNA complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen pre-replicative complex intracellular organelle nucleoplasm cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle protein-containing complex protein-DNA complex nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle lumen pre-replicative complex intracellular organelle nucleoplasm organelle lumen organelle nuclear pre-replicative complex nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR032054	DNA replication factor Cdt1, C-terminal	Domain
A, B	IPR038090	DNA replication factor Cdt1, C-terminal WH domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.