5MDR

Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi in complex with chitohexaose

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF13609	e5mdrA1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: PF13609	ECOD (1.6)
D	PF13609	e5mdrD1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: PF13609	ECOD (1.6)
E	PF13609	e5mdrE1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: PF13609	ECOD (1.6)
B	PF13609	e5mdrB1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: PF13609	ECOD (1.6)
C	PF13609	e5mdrC1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: PF13609	ECOD (1.6)
F	PF13609	e5mdrF1	A: beta barrels	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: PF13609	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF13609	Gram-negative porin (Porin_4)	Gram-negative porin	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Chitoporin	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity	transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization	protein-containing complex membrane pore complex membrane protein complex cellular anatomical entity cell periphery cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR033900	Porin domain, Gram-negative type	Domain
A, B, C, D, E A, B, C, D, E, F	IPR023614	Porin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001702	Porin, Gram-negative type	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F	OPM	Transmembrane	Beta-barrel transmembrane	Trimeric porins (n=16,S=20)	General Bacterial Porin (GBP)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Beta-Barrel Membrane Proteins: Porins and Relatives	Chitoporin (ChiP), in vitro-folded crystal form I

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.