5MCP | pdb_00005mcp

Structure of IMP dehydrogenase from Ashbya gossypii bound to ATP


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be5mcpB1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)
He5mcpH1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)
Ge5mcpG1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)
Fe5mcpF1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)
Ee5mcpE1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)
De5mcpD1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)
Ce5mcpC1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)
Ae5mcpA1 A: Profilin-likeX: a+b domain in beta-lactamase/transpeptidase-like proteinsH: a+b domain in beta-lactamase/transpeptidase-like proteinsT: UCR_6-4kDF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
H3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
G3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
F3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
E3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
D3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
C3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)
A3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00571CBS domain (CBS)CBS domainCBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ...CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet [5]. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet [4]. CBS domain pairs from AMPK bind AMP or ATP [5]. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP [5].
Domain
A, B, C, D, E
PF00478IMP dehydrogenase / GMP reductase domain (IMPDH)IMP dehydrogenase / GMP reductase domainThis family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains Pfam:PF00571 are inserted in the TIM barrel [2]. This family is a membe ...This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains Pfam:PF00571 are inserted in the TIM barrel [2]. This family is a member of the common phosphate binding site TIM barrel family.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Inosine-5'-monophosphate dehydrogenase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR046342CBS domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR000644CBS domainDomain
A, B, C, D, E
IPR001093IMP dehydrogenase/GMP reductaseDomain
A, B, C, D, E
IPR013785Aldolase-type TIM barrelHomologous Superfamily
A, B, C, D, E
IPR005990Inosine-5'-monophosphate dehydrogenaseFamily
A, B, C, D, E
IPR015875IMP dehydrogenase / GMP reductase, conserved siteConserved Site