5LS6
Structure of Human Polycomb Repressive Complex 2 (PRC2) with inhibitor
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | VEFS box-like | 8090819 | 3002459 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | VEFS box-like | 8090819 | 3002459 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | VEFS box-like | 8090819 | 3002459 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | VEFS box-like | 8090819 | 3002459 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | SET | e5ls6D1 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: SET | ECOD (1.6) |
D | KOG1079_1st | e5ls6D7 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: KOG1079_1st | ECOD (1.6) |
D | Myb_DNA-binding_3 | e5ls6D8 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
D | KOG1079_4th | e5ls6D2 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_4th | ECOD (1.6) |
D | KOG1079_3rd | e5ls6D4 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_3rd | ECOD (1.6) |
D | KOG1079_2nd | e5ls6D6 | A: few secondary structure elements | X: Ezh2 MCSS domain (From Topology) | H: Ezh2 MCSS domain (From Topology) | T: Ezh2 MCSS domain | F: KOG1079_2nd | ECOD (1.6) |
D | EZH2_WD-Binding | e5ls6D3 | A: extended segments | X: Ezh2 N-terminal domain (From Topology) | H: Ezh2 N-terminal domain (From Topology) | T: Ezh2 N-terminal domain | F: EZH2_WD-Binding | ECOD (1.6) |
A | SET | e5ls6A3 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: SET | ECOD (1.6) |
A | KOG1079_1st | e5ls6A4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: KOG1079_1st | ECOD (1.6) |
A | Myb_DNA-binding_3 | e5ls6A6 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
A | KOG1079_4th | e5ls6A1 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_4th | ECOD (1.6) |
A | KOG1079_3rd | e5ls6A7 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_3rd | ECOD (1.6) |
A | KOG1079_2nd | e5ls6A5 | A: few secondary structure elements | X: Ezh2 MCSS domain (From Topology) | H: Ezh2 MCSS domain (From Topology) | T: Ezh2 MCSS domain | F: KOG1079_2nd | ECOD (1.6) |
A | EZH2_WD-Binding | e5ls6A2 | A: extended segments | X: Ezh2 N-terminal domain (From Topology) | H: Ezh2 N-terminal domain (From Topology) | T: Ezh2 N-terminal domain | F: EZH2_WD-Binding | ECOD (1.6) |
G | SET | e5ls6G6 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: SET | ECOD (1.6) |
G | KOG1079_1st | e5ls6G5 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: KOG1079_1st | ECOD (1.6) |
G | Myb_DNA-binding_3 | e5ls6G7 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
G | KOG1079_4th | e5ls6G3 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_4th | ECOD (1.6) |
G | KOG1079_3rd | e5ls6G4 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_3rd | ECOD (1.6) |
G | KOG1079_2nd | e5ls6G2 | A: few secondary structure elements | X: Ezh2 MCSS domain (From Topology) | H: Ezh2 MCSS domain (From Topology) | T: Ezh2 MCSS domain | F: KOG1079_2nd | ECOD (1.6) |
G | EZH2_WD-Binding | e5ls6G1 | A: extended segments | X: Ezh2 N-terminal domain (From Topology) | H: Ezh2 N-terminal domain (From Topology) | T: Ezh2 N-terminal domain | F: EZH2_WD-Binding | ECOD (1.6) |
J | SET | e5ls6J7 | A: beta barrels | X: beta-clip | H: SET domain-like (From Topology) | T: SET domain-like | F: SET | ECOD (1.6) |
J | KOG1079_1st | e5ls6J2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: KOG1079_1st | ECOD (1.6) |
J | Myb_DNA-binding_3 | e5ls6J6 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
J | KOG1079_4th | e5ls6J3 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_4th | ECOD (1.6) |
J | KOG1079_3rd | e5ls6J5 | A: few secondary structure elements | X: Zn3Cys9 preSET domain-related (From Topology) | H: Zn3Cys9 preSET domain-related (From Topology) | T: Zn3Cys9 preSET domain-related | F: KOG1079_3rd | ECOD (1.6) |
J | KOG1079_2nd | e5ls6J1 | A: few secondary structure elements | X: Ezh2 MCSS domain (From Topology) | H: Ezh2 MCSS domain (From Topology) | T: Ezh2 MCSS domain | F: KOG1079_2nd | ECOD (1.6) |
J | EZH2_WD-Binding | e5ls6J4 | A: extended segments | X: Ezh2 N-terminal domain (From Topology) | H: Ezh2 N-terminal domain (From Topology) | T: Ezh2 N-terminal domain | F: EZH2_WD-Binding | ECOD (1.6) |
B | ANAPC4_WD40_5 | e5ls6B1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
E | ANAPC4_WD40_5 | e5ls6E1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
H | ANAPC4_WD40_5 | e5ls6H1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
K | ANAPC4_WD40_5 | e5ls6K1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
C | VEFS-Box | e5ls6C1 | A: alpha arrays | X: lambda integrase-N-like | H: VEFS domain (From Topology) | T: VEFS domain | F: VEFS-Box | ECOD (1.6) |
F | VEFS-Box | e5ls6F1 | A: alpha arrays | X: lambda integrase-N-like | H: VEFS domain (From Topology) | T: VEFS domain | F: VEFS-Box | ECOD (1.6) |
I | VEFS-Box | e5ls6I1 | A: alpha arrays | X: lambda integrase-N-like | H: VEFS domain (From Topology) | T: VEFS domain | F: VEFS-Box | ECOD (1.6) |
L | VEFS-Box | e5ls6L1 | A: alpha arrays | X: lambda integrase-N-like | H: VEFS domain (From Topology) | T: VEFS domain | F: VEFS-Box | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
E | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
H | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
K | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18264 | CXC domain (preSET_CXC) | CXC domain | This domain is found to the N-terminus of the SET domain in the EZH2 protein [1]. It is a zinc binding domain. | Domain | |
PF00856 | SET domain (SET) | SET domain | - | Family | |
PF18118 | Polycomb repressive complex 2 tri-helical domain (PRC2_HTH_1) | Polycomb repressive complex 2 tri-helical domain | This domain can be found in the Polycomb repressive complex 2 (PRC2) present in Homo sapiens. Polycomb complexes maintain repressive chromatin states by silencing gene expression. PRC2 does this by methylating lysine 27 of histone H3. This domain mak ... | Domain | |
PF11616 | WD repeat binding protein EZH2 (EZH2_WD-Binding) | WD repeat binding protein EZH2 | - | Family | |
PF21358 | Ezh2, MCSS domain (Ezh2_MCSS) | Ezh2, MCSS domain | This entry represents the MCSS domain found in the middle region of the Histone-lysine N-methyltransferase EZH2 [1-5]. It makes contacts with the adjacent SANT domain and the Vefs domain from EED. Additionally, this domain contains a zinc-binding mot ... | Domain | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF09733 | VEFS-Box of polycomb protein (VEFS-Box) | VEFS-Box of polycomb protein | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
M [auth Q], N [auth R], O [auth S], P [auth T] | M3L | Parent Component: LYS :  AA0074 :  N6,N6,N6-trimethyl-L-lysine MOD:00083 |