Annotations: 5LQZ

Structure of F-ATPase from Pichia angusta, state1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N [auth J]	SCOP2B Superfamily	F1 ATPase inhibitor, IF1, C-terminal domain	8037355	3001557	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
M [auth I]	LptE	e5lqzI1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: LptE	ECOD (v295.2)
L [auth H]		e5lqzH1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
K [auth G]		e5lqzG1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
J [auth F]		e5lqzF1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
I [auth E]		e5lqzE1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
H [auth D]		e5lqzD1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
G [auth C]		e5lqzC1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
F [auth B]		e5lqzB1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
E [auth A]		e5lqzA1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
CA [auth Y]	Peptidase_C78	e5lqzY1	A: alpha arrays	X: Alpha-crystallin B chain N-terminal domain	H: Alpha-crystallin B chain N-terminal domain	T: Alpha-crystallin B chain N-terminal domain	F: Peptidase_C78	ECOD (v295.2)
AA [auth W]	Prot_ATP_ID_OB_C	e5lqzW1	A: alpha arrays	X: OB-fold	H: Nucleic acid-binding protein	T: Nucleic acid-binding protein	F: Prot_ATP_ID_OB_C	ECOD (v295.2)
Z [auth V]	LptE	e5lqzV1	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: LptE	ECOD (v295.2)
X [auth T]		e5lqzT1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
W [auth S]		e5lqzS1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
V [auth R]		e5lqzR1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
U [auth Q]		e5lqzQ1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
T [auth P]		e5lqzP1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
S [auth O]		e5lqzO1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
R [auth N]		e5lqzN1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
Q [auth M]		e5lqzM1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
P [auth L]		e5lqzL1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)
O [auth K]		e5lqzK1	A: alpha arrays	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
L [auth H]	PF21334	Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain (ATPD_C_fung)	Fungal epsilon subunit of F1F0-ATP synthase C-terminal domain	F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from fungi (called epsilon in bacteria or chloropla ...	F-type ATPases consist of two structural domains, F1 containing the extramembraneous catalytic core, and F0 which contains the membrane proton channel. This entry includes ATP synthase subunit delta from fungi (called epsilon in bacteria or chloroplast ATPase), which interacts with subunit C from F0 which is important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit). This entry represents the C-terminal alpha-helical domain which is likely to act as an inhibitor of ATPase activity [1-5].	Domain
K [auth G]	PF00231	ATP synthase (ATP-synt)	ATP synthase		Domain
H [auth D], I [auth E], J [auth F]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
H [auth D], I [auth E], J [auth F]	PF22919	C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)	C-terminal domain of V and A type ATP synthase	This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.	Domain
H [auth D], I [auth E], J [auth F]	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
E [auth A], F [auth B], G [auth C]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
E [auth A], F [auth B], G [auth C]	PF00306	ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C)	ATP synthase alpha/beta chain, C terminal domain		Domain
E [auth A], F [auth B], G [auth C]	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
Y [auth U]	PF00213	ATP synthase delta (OSCP) subunit (OSCP)	ATP synthase delta (OSCP) subunit	-	Family
O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
M [auth I]	ATP synthase epsilon subunit	-	-	-
L [auth H]	ATP synthase delta subunit	-	-	-
K [auth G]	ATP synthase gamma subunit	-	-	-
H [auth D], I [auth E], J [auth F]	ATP synthase beta subunit	-	-	-
E [auth A], F [auth B], G [auth C]	ATP synthase alpha subunit	-	-	-
D [auth 4]	ATP synthase subunit b	-	-	-
C [auth 3]	ATP synthase subunit a	-	-	-
B [auth 2]	ATP synthase subunit AAP1	-	-	-
DA [auth Z]	ATP synthase subunit a	-	-	-
CA [auth Y]	ATP synthase subunit a	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
BA [auth X]	ATP synthase subunit h	-	-	-
AA [auth W]	ATP synthase subunit d	-	-	-
Z [auth V]	ATP synthase subunit b	-	-	-
Y [auth U]	ATP synthase OSCP subunit	-	-	-
O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	ATP synthase subunit c	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	protein-containing complex cellular anatomical structure proton-transporting two-sector ATPase complex membrane membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex membrane-bounded organelle protein-containing complex cellular anatomical structure proton-transporting two-sector ATPase complex membrane membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex membrane-bounded organelle mitochondrial membrane intracellular anatomical structure mitochondrion intracellular membrane-bounded organelle intracellular organelle organelle envelope organelle mitochondrial envelope cytoplasm organelle membrane
N [auth J]	ATP synthase inhibitor protein IF1	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity angiostatin binding calmodulin binding molecular function inhibitor activity molecular function regulator activity ATPase inhibitor activity structural molecule activity ATPase binding enzyme binding	aerobic respiration oxidative phosphorylation regulation of cellular process negative regulation of small molecule metabolic process nucleotide biosynthetic process negative regulation of biological process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process negative regulation of ATP metabolic process purine ribonucleoside triphosphate biosynthetic process regulation of nucleotide biosynthetic process regulation of primary metabolic process regulation of ATP metabolic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process aerobic respiration oxidative phosphorylation regulation of cellular process negative regulation of small molecule metabolic process nucleotide biosynthetic process negative regulation of biological process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process negative regulation of ATP metabolic process purine ribonucleoside triphosphate biosynthetic process regulation of nucleotide biosynthetic process regulation of primary metabolic process regulation of ATP metabolic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process negative regulation of nucleotide metabolic process purine nucleoside triphosphate biosynthetic process regulation of small molecule metabolic process negative regulation of nucleotide biosynthetic process negative regulation of mitochondrial ATP synthesis coupled proton transport regulation of nucleotide metabolic process small molecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process regulation of biological process negative regulation of metabolic process primary metabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process ribonucleoside triphosphate biosynthetic process biosynthetic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process regulation of phosphorus metabolic process proton motive force-driven mitochondrial ATP synthesis nucleoside triphosphate metabolic process purine ribonucleotide metabolic process regulation of metabolic process purine nucleotide biosynthetic process ribose phosphate metabolic process cellular respiration ATP metabolic process negative regulation of purine nucleotide metabolic process energy derivation by oxidation of organic compounds ATP biosynthetic process proton motive force-driven ATP synthesis negative regulation of ATP biosynthetic process regulation of mitochondrial ATP synthesis coupled proton transport purine nucleotide metabolic process ribonucleotide metabolic process negative regulation of purine nucleotide biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process negative regulation of cellular process regulation of biosynthetic process purine nucleoside triphosphate metabolic process carbohydrate derivative biosynthetic process regulation of purine nucleotide biosynthetic process nucleoside triphosphate biosynthetic process biological regulation generation of precursor metabolites and energy nucleobase-containing compound biosynthetic process purine-containing compound metabolic process regulation of ATP biosynthetic process organophosphate metabolic process negative regulation of biosynthetic process negative regulation of phosphorus metabolic process cellular process developmental process multicellular organismal process cellular developmental process homeostatic process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development homeostasis of number of cells myeloid cell homeostasis erythrocyte homeostasis protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis heme metabolic process pigment metabolic process porphyrin-containing compound biosynthetic process tetrapyrrole metabolic process heme biosynthetic process pigment biosynthetic process tetrapyrrole biosynthetic process porphyrin-containing compound metabolic process negative regulation of cell population proliferation cell population proliferation endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation negative regulation of hydrolase activity regulation of molecular function regulation of catalytic activity regulation of hydrolase activity negative regulation of molecular function negative regulation of catalytic activity	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cell surface protein-containing complex
A [auth 1]	ATP synthase subunit f	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth Y]	IPR023011	ATP synthase, F0 complex, subunit A, active site	Active Site
CA [auth Y]	IPR000568	ATP synthase, F0 complex, subunit A	Family
CA [auth Y]	IPR035908	ATP synthase, F0 complex, subunit A superfamily	Homologous Superfamily
CA [auth Y]	IPR045083	ATP synthase, F0 complex, subunit A, bacterial/mitochondria	Family
O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	IPR038662	F1F0 ATP synthase subunit C superfamily	Homologous Superfamily
O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	IPR000454	ATP synthase, F0 complex, subunit C	Family
O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
N [auth J]	IPR007648	Mitochondrial ATPase inhibitor	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
CA [auth Y], N [auth J], O [auth K], P [auth L], Q [auth M] CA [auth Y], N [auth J], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
CA [auth Y], N [auth J], O [auth K], P [auth L], Q [auth M] CA [auth Y], N [auth J], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
CA [auth Y], N [auth J], O [auth K], P [auth L], Q [auth M] CA [auth Y], N [auth J], O [auth K], P [auth L], Q [auth M], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	F-type ATPase	ATP synthase (F-ATPase), State 1