5L85 | pdb_00005l85

Solution structure of the complex between human ZNHIT3 and NUFIP1 proteins

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ribosomal_L3	e5l85A1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L3	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21373	Zinc finger HIT domain-containing protein 3, C-terminal domain (ZNHIT3_C)	Zinc finger HIT domain-containing protein 3, C-terminal domain	This domain is found at the C-terminal end of Zinc finger HIT domain- containing protein 3 from humans (ZNHIT3), a cofactor of the RNA-binding nuclear protein NUFIP1. This domain shows five alpha- helices [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Nuclear fragile X mental retardation-interacting protein 1	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding nucleic acid binding protein-macromolecule adaptor activity molecular adaptor activity ATPase binding protein binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding nucleic acid binding protein-macromolecule adaptor activity molecular adaptor activity ATPase binding protein binding enzyme binding identical protein binding	ribonucleoprotein complex biogenesis protein-containing complex organization small nucleolar ribonucleoprotein complex assembly protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis box C/D snoRNP assembly RNA metabolic process primary metabolic process ribonucleoprotein complex biogenesis protein-containing complex organization small nucleolar ribonucleoprotein complex assembly protein-RNA complex assembly cellular component organization cellular component biogenesis protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis box C/D snoRNP assembly RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process RNA processing macromolecule metabolic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of biological process biological regulation regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix intracellular membraneless organelle nucleolus membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix intracellular membraneless organelle nucleolus membraneless organelle perichromatin fibrils nuclear chromosome chromosome chromatin presynapse synapse cell junction presynaptic active zone protein-containing complex transcription elongation factor complex nuclear protein-containing complex nucleoplasm fibrillar center ribonucleoprotein complex pre-snoRNP complex
A	Zinc finger HIT domain-containing protein 3	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding nuclear thyroid hormone receptor binding protein binding DNA-binding transcription factor binding	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribosomal large subunit biogenesis macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process cellular process metabolic process macromolecule metabolic process maturation of LSU-rRNA regulation of cellular process regulation of primary metabolic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process protein-containing complex organization small nucleolar ribonucleoprotein complex assembly protein-RNA complex assembly cellular component organization protein-RNA complex organization cellular component assembly protein-containing complex assembly box C/D snoRNP assembly	protein-containing complex ribonucleoprotein complex pre-snoRNP complex cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR039136	NUFIP1-like	Family
B	IPR013087	Zinc finger C2H2-type	Domain
B	IPR019496	FMR1-interacting protein 1, conserved domain	Domain
A	IPR051639	Box C/D snoRNA	Family
A	IPR048371	Zinc finger HIT domain-containing protein 3, C-terminal domain	Domain
A	IPR007529	Zinc finger, HIT-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q9UHK0	malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma
A	Pharos: Q15649	PEHO syndrome acute myeloid leukemia epilepsy lung cancer malignant glioma ovarian cancer plasma cell myeloma astrocytic tumor glioblastoma lymphatic system disease neurodegenerative disease Progressive encephalopathy with edema, hypsarrhythmia and optic atrophy syndrome chronic kidney disease IgA glomerulonephritis malignant ependymoma PEHO syndrome acute myeloid leukemia epilepsy lung cancer malignant glioma ovarian cancer plasma cell myeloma astrocytic tumor glioblastoma lymphatic system disease neurodegenerative disease Progressive encephalopathy with edema, hypsarrhythmia and optic atrophy syndrome chronic kidney disease IgA glomerulonephritis malignant ependymoma osteosarcoma peho-like syndrome Tourette syndrome

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.