Annotations: 5L6M

Structure of Caulobacter crescentus VapBC1 (VapB1deltaC:VapC1 form)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
K		e5l6mK1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F:	ECOD (v295.2)
J		e5l6mJ1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F:	ECOD (v295.2)
G		e5l6mG1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F:	ECOD (v295.2)
F		e5l6mF1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F:	ECOD (v295.2)
C		e5l6mC1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F:	ECOD (v295.2)
B		e5l6mB1	A: alpha arrays	X: F-type ATP synthase subunit b	H: Bacterial cell wall synthesis membrane enzyme MraY-related	T: Bacterial cell wall synthesis membrane enzyme MraY-related	F:	ECOD (v295.2)
L		e5l6mL1	A: alpha arrays	X: Mog1p/PsbP-like	H: EGF-related	T: TNF receptor-like	F:	ECOD (v295.2)
I	Cadherin	e5l6mI1	A: alpha arrays	X: helical bundle domain in reverse transcriptase-like polymerases	H: helical bundle domain in reverse transcriptase-like polymerases	T: CARF (CRISPR-associated Rossmann fold) domains	F: Cadherin	ECOD (v295.2)
H	Peptidase_C78	e5l6mH1	A: alpha arrays	X: Alpha-crystallin B chain N-terminal domain	H: Alpha-crystallin B chain N-terminal domain	T: Alpha-crystallin B chain N-terminal domain	F: Peptidase_C78	ECOD (v295.2)
E	FCH	e5l6mE1	A: alpha arrays	X: Ntn/PP2C	H: Ntn	T: Penicillin acylase, catalytic domain	F: FCH	ECOD (v295.2)
D	PemK_toxin	e5l6mD1	A: alpha arrays	X: Alpha-crystallin B chain N-terminal domain	H: profilin-like	T: C-terminal domain in DHH phosphoesterases	F: PemK_toxin	ECOD (v295.2)
A	Phage_capsid	e5l6mA1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Osmotin-like	T: Osmotin-like	F: Phage_capsid	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
K	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
J	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
G	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
F	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
C	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)
B	3.40.50.1010	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	5'-nuclease	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, C, F, G, J B, C, F, G, J, K	PF01850	PIN domain (PIN)	PIN domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, C, F, G, J B, C, F, G, J, K	Ribonuclease VapC	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding nuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity	-	-
A, D, E, H, I A, D, E, H, I, L	VapB family protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, C, F, G, J B, C, F, G, J, K	IPR002716	PIN domain	Domain
B, C, F, G, J B, C, F, G, J, K	IPR029060	PIN-like domain superfamily	Homologous Superfamily
B, C, F, G, J B, C, F, G, J, K	IPR022907	VapC family	Family
B, C, F, G, J B, C, F, G, J, K	IPR050556	Type II toxin-antitoxin system RNase	Family
A, D, E, H, I A, D, E, H, I, L	IPR037914	SpoVT-AbrB domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.