Annotations: 5KJI

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	VEFS box-like	8045498	4004497	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	VEFS box-like	8090820	3002459	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ANAPC4_WD40_2	e5kjiA2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: ANAPC4_WD40_2	ECOD (1.6)
A	EUF08652	e5kjiA1	A: a/b three-layered sandwiches	X: Polycomb protein Eed insertion domain (From Topology)	H: Polycomb protein Eed insertion domain (From Topology)	T: Polycomb protein Eed insertion domain	F: EUF08652	ECOD (1.6)
B	SET	e5kjiB5	A: beta barrels	X: beta-clip	H: SET domain-like (From Topology)	T: SET domain-like	F: SET	ECOD (1.6)
B	UNK_F_TYPE	e5kjiB6	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: UNK_F_TYPE	ECOD (1.6)
B	VEFS-Box_1	e5kjiB3	A: alpha arrays	X: lambda integrase-N-like	H: VEFS domain (From Topology)	T: VEFS domain	F: VEFS-Box_1	ECOD (1.6)
B	KOG1079_like	e5kjiB1	A: few secondary structure elements	X: Zn3Cys9 preSET domain-related (From Topology)	H: Zn3Cys9 preSET domain-related (From Topology)	T: Zn3Cys9 preSET domain-related	F: KOG1079_like	ECOD (1.6)
B	KOG1079_4th	e5kjiB2	A: few secondary structure elements	X: Zn3Cys9 preSET domain-related (From Topology)	H: Zn3Cys9 preSET domain-related (From Topology)	T: Zn3Cys9 preSET domain-related	F: KOG1079_4th	ECOD (1.6)
B	EUF08759	e5kjiB7	A: few secondary structure elements	X: Ezh2 MCSS domain (From Topology)	H: Ezh2 MCSS domain (From Topology)	T: Ezh2 MCSS domain	F: EUF08759	ECOD (1.6)
B	EUF08793	e5kjiB4	A: extended segments	X: Ezh2 N-terminal domain (From Topology)	H: Ezh2 N-terminal domain (From Topology)	T: Ezh2 N-terminal domain	F: EUF08793	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
B	PF00856	SET domain (SET)	SET domain	-	Family
B	PF21509	Fungal polycomb repressive complex 2, Ezh2-like, preSET CXC domain (Ezh2-like__CXC_fung)	Fungal polycomb repressive complex 2, Ezh2-like, preSET CXC domain	This domain is found in a group of mostly fungal proteins, including the Polycomb repressive complex 2 (PRC2) subunit Ezh2 from Chaetomium thermophilum (Swiss:G0SDW4), which is responsible for methylation of histone H3 lysine 27 (H3K27) and therefore ...	This domain is found in a group of mostly fungal proteins, including the Polycomb repressive complex 2 (PRC2) subunit Ezh2 from Chaetomium thermophilum (Swiss:G0SDW4), which is responsible for methylation of histone H3 lysine 27 (H3K27) and therefore involved in epigenetic gene silencing. This entry represents the domain found N-terminal to to the SET domain (Pfam:PF00856). It contains a Zn3Cys8His and a Zn3Cys9 cluster [1-4].	Domain
B	PF18600	Fungal MCSS domain (Ezh2_MCSS_fung)	Fungal MCSS domain	Polycomb repressive complex 2 (PRC2) carries out the methylation of lysine 27 of histone H3, a hallmark of repressive chromatin. Three core subunits make up the catalytic core of PRC2; the SET domain containing EZH2, the zinc-finger containing SUZ12 ...	Polycomb repressive complex 2 (PRC2) carries out the methylation of lysine 27 of histone H3, a hallmark of repressive chromatin. Three core subunits make up the catalytic core of PRC2; the SET domain containing EZH2, the zinc-finger containing SUZ12 and the WD40 repeat protein EED. The complex forms a compact arrangement of three lobes. The middle lobe largely comprises two domains that mark the beginning of the carboxy (C)-terminal region of EZH2 (MCSS and SANT2) and the helical, C-terminal, component of the Suz12 Vefs domain. This entry describes the MCSS (also known as SANT2L) domain. There is one zinc binding (Zn1Cys3His1) which is formed solely by MCSS [1, 2].	Domain
B	PF09733	VEFS-Box of polycomb protein (VEFS-Box)	VEFS-Box of polycomb protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	putative polycomb protein Eed	-	-	membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle cellular anatomical entity
B	Putative uncharacterized protein,Zinc finger domain-containing protein	catalytic activity, acting on a protein transferase activity, transferring one-carbon groups protein methyltransferase activity histone modifying activity transferase activity methyltransferase activity catalytic activity histone methyltransferase activity cation binding ion binding binding metal ion binding small molecule binding	methylation metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001680	WD40 repeat	Repeat
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR019135	Polycomb protein, VEFS-Box	Domain
B	IPR040968	Ezh2, MCSS domain, fungal	Domain
B	IPR046341	SET domain superfamily	Homologous Superfamily
B	IPR048360	Ezh2-like, preSET CXC domain, fungi	Domain
B	IPR040595	EZH2, N-terminal domain	Domain
B	IPR045318	Histone-lysine N-methyltransferase EZH1/2-like	Family
B	IPR001214	SET domain	Domain
B	IPR026489	CXC domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.