5K2J | pdb_00005k2j

Crystal structure of reduced Prx3 in complex with h2o2 from Vibrio vulnificus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5k2jl1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
L	d5k2jl2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
K	d5k2jk1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
K	d5k2jk2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
J	d5k2jj1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
J	d5k2jj2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
I	d5k2ji1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
I	d5k2ji2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
H	d5k2jh1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
H	d5k2jh2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
G	d5k2jg1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
G	d5k2jg2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
F	d5k2jf1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
F	d5k2jf2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
E	d5k2je1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
E	d5k2je2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
D	d5k2jd1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
D	d5k2jd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
C	d5k2jc1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
C	d5k2jc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
B	d5k2jb1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
B	d5k2jb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
A	d5k2ja1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)
A	d5k2ja2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Vibrio vulnificus MO6-24/O ) [TaxId: 914127 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Hist_deacetyl	e5k2jL1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
K	Hist_deacetyl	e5k2jK1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
J	Hist_deacetyl	e5k2jJ1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
I	Hist_deacetyl	e5k2jI1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
H	Hist_deacetyl	e5k2jH1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
G	Hist_deacetyl	e5k2jG1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
F	Hist_deacetyl	e5k2jF1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
E	Hist_deacetyl	e5k2jE1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
D	Hist_deacetyl	e5k2jD1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
C	Hist_deacetyl	e5k2jC1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
B	Hist_deacetyl	e5k2jB1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)
A	Hist_deacetyl	e5k2jA1	A: alpha arrays	X: HTH	H: HAMP domain	T: HAMP domain	F: Hist_deacetyl	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
K	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
J	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
I	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
G	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
F	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
D	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	1-Cys peroxiredoxin	peroxidase activity oxidoreductase activity thioredoxin-dependent peroxiredoxin activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor thioredoxin peroxidase activity catalytic activity peroxiredoxin activity	catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process cell redox homeostasis cellular homeostasis homeostatic process cellular response to stimulus response to oxidative stress cellular response to chemical stimulus response to stimulus cellular response to stress catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process cell redox homeostasis cellular homeostasis homeostatic process cellular response to stimulus response to oxidative stress cellular response to chemical stimulus response to stimulus cellular response to stress response to stress response to chemical cellular response to oxidative stress cellular response to chemical stress	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013766	Thioredoxin domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013740	Redoxin	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR037944	Peroxiredoxin-5-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.