5JSI

Structure of membrane protein

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5jsib_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Candidatus Actinomarina minuta ) [TaxId: 1389454 ], SCOPe (2.08)
Ad5jsia_ Membrane and cell surface proteins and peptides Class A G protein-coupled receptor (GPCR)-like Class A G protein-coupled receptor (GPCR)-like automated matches automated matches (Candidatus Actinomarina minuta ) [TaxId: 1389454 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyG protein-coupled receptor-like8071328 3000473 SCOP2B (2022-06-29)
ASCOP2 FamilyBacteriorhodopsin-like8071327 4001859 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyG protein-coupled receptor-like8071328 3000473 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BBac_rhodopsine5jsiB1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)
ABac_rhodopsine5jsiA1 A: alpha bundlesX: Family A G protein-coupled receptor-like (From Topology)H: Family A G protein-coupled receptor-like (From Topology)T: Family A G protein-coupled receptor-likeF: Bac_rhodopsinECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01036Bacteriorhodopsin-like protein (Bac_rhodopsin)Bacteriorhodopsin-like proteinThe bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [2,3]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, th ...The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria [2,3]. They are integral membrane proteins believed to contain seven transmembrane (TM) domains, the last of which contains the attachment point for retinal (a conserved lysine). This family also includes distantly related proteins that do not contain the retinal binding lysine and so cannot function as opsins. Some fungal examples are: Swiss:O74870, Swiss:P25619, Swiss:P38079, Swiss:Q12117.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Bacteriorhodopsin- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR001425Archaeal/bacterial/fungal rhodopsinsFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
A, B
OPMTransmembraneAlpha-helical polytopicRhodopsin-like receptors and pumpsMicrobial and algal rhodopsins

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
A, B
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
A, B
MemProtMDAnnotated as membrane protein by MemProtMD

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
LYR Parent Component: LYS

RESID:  AA0120

PSI-MOD :  N6-retinylidene-L-lysine MOD:00129