5J8K

Architecture of supercomplex I-III2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HB [auth AF]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8068579 3000797 SCOP2B (2022-06-29)
SB [auth AQ]SCOP2B Superfamily14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8068579 3000797 SCOP2B (2022-06-29)
XB [auth AV]SCOP2 FamilySubunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8107761 4002065 SCOP2 (2022-06-29)
XB [auth AV]SCOP2 SuperfamilySubunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)8107762 3000787 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
NB [auth AL]PF00675,PF05193e5j8kAL2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF00675,PF05193ECOD (1.6)
NB [auth AL]PF05193e5j8kAL1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF05193ECOD (1.6)
CB [auth AA]PF00675,PF05193e5j8kAA1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF00675,PF05193ECOD (1.6)
CB [auth AA]PF05193e5j8kAA2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF05193ECOD (1.6)
DB [auth AB]PF00675e5j8kAB1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF00675ECOD (1.6)
DB [auth AB]PF05193e5j8kAB2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF05193ECOD (1.6)
OB [auth AM]PF00675e5j8kAM2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF00675ECOD (1.6)
OB [auth AM]PF05193e5j8kAM1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: LuxS/MPP-like metallohydrolaseF: PF05193ECOD (1.6)
PB [auth AN]PF00032e5j8kAN2 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF00032ECOD (1.6)
PB [auth AN]PF00033e5j8kAN1 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: PF00033ECOD (1.6)
EB [auth AC]PF00032e5j8kAC1 A: alpha bundlesX: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF00032ECOD (1.6)
EB [auth AC]PF00033e5j8kAC2 A: alpha bundlesX: Transmembrane heme-binding four-helical bundle (From Homology)H: Transmembrane heme-binding four-helical bundleT: Transmembrane di-heme cytochromesF: PF00033ECOD (1.6)
FB [auth AD]PF02167e5j8kAD1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: PF02167ECOD (1.6)
FB [auth AD]F_UNCLASSIFIEDe5j8kAD2 A: extended segmentsX: cytochrome c1 transmembrane anchor (From Topology)H: cytochrome c1 transmembrane anchor (From Topology)T: cytochrome c1 transmembrane anchorF: F_UNCLASSIFIEDECOD (1.6)
QB [auth AO]PF02167e5j8kAO1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: PF02167ECOD (1.6)
QB [auth AO]F_UNCLASSIFIEDe5j8kAO2 A: extended segmentsX: cytochrome c1 transmembrane anchor (From Topology)H: cytochrome c1 transmembrane anchor (From Topology)T: cytochrome c1 transmembrane anchorF: F_UNCLASSIFIEDECOD (1.6)
GB [auth AE]PF00355e5j8kAE3 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: PF00355ECOD (1.6)
GB [auth AE]PF02921e5j8kAE2 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: PF02921ECOD (1.6)
RB [auth AP]PF00355e5j8kAP2 A: beta sandwichesX: ISP domain (From Topology)H: ISP domain (From Topology)T: ISP domainF: PF00355ECOD (1.6)
RB [auth AP]PF02921e5j8kAP1 A: extended segmentsX: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)H: iron-sulfur subunit (ISP) transmembrane anchor (From Topology)T: iron-sulfur subunit (ISP) transmembrane anchorF: PF02921ECOD (1.6)
HB [auth AF]PF02271e5j8kAF1 A: alpha arraysX: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF02271ECOD (1.6)
SB [auth AQ]PF02271e5j8kAQ1 A: alpha arraysX: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF02271ECOD (1.6)
IB [auth AG]PF02939e5j8kAG1 A: extended segmentsX: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF02939ECOD (1.6)
TB [auth AR]PF02939e5j8kAR1 A: extended segmentsX: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF02939ECOD (1.6)
UB [auth AS]PF02320e5j8kAS1 A: alpha bundlesX: cytochrome bc1 complex 11 kDa protein-likeH: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF02320ECOD (1.6)
JB [auth AH]PF02320e5j8kAH1 A: alpha bundlesX: cytochrome bc1 complex 11 kDa protein-likeH: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF02320ECOD (1.6)
KB [auth AI]PF09165e5j8kAI1 A: extended segmentsX: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology)H: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology)T: Ubiquinol-cytochrome c reductase 8 kDa proteinF: PF09165ECOD (1.6)
VB [auth AT]PF09165e5j8kAT1 A: extended segmentsX: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology)H: Ubiquinol-cytochrome c reductase 8 kDa protein (From Topology)T: Ubiquinol-cytochrome c reductase 8 kDa proteinF: PF09165ECOD (1.6)
LB [auth AJ]PF05365e5j8kAJ1 A: extended segmentsX: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF05365ECOD (1.6)
WB [auth AU]PF05365e5j8kAU1 A: extended segmentsX: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF05365ECOD (1.6)
MB [auth AK]PF08997e5j8kAK1 A: extended segmentsX: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF08997ECOD (1.6)
XB [auth AV]PF08997e5j8kAV1 A: extended segmentsX: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)H: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (From Topology)T: Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)F: PF08997ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
CB [auth AA],
NB [auth AL]
PF05193Peptidase M16 inactive domain (Peptidase_M16_C)Peptidase M16 inactive domainPeptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1].Domain
CB [auth AA],
NB [auth AL]
PF00675Insulinase (Peptidase family M16) (Peptidase_M16)Insulinase (Peptidase family M16)- Family
EB [auth AC],
PB [auth AN]
PF00032Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C)Cytochrome b(C-terminal)/b6/petD- Domain
EB [auth AC],
PB [auth AN]
PF00033Cytochrome b/b6/petB (Cytochrome_B)Cytochrome b/b6/petB- Domain
HB [auth AF],
SB [auth AQ]
PF02271Ubiquinol-cytochrome C reductase complex 14kD subunit (UCR_14kD)Ubiquinol-cytochrome C reductase complex 14kD subunit- Family
IB [auth AG],
TB [auth AR]
PF02939UcrQ family (UcrQ)UcrQ family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
COMPLEX I PGIV/NDUFA8---
COMPLEX I 39KDA/NDUFA9---
CA [auth c]COMPLEX I SDAP/NDUFAB1---
AB [auth u]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 15---
CB [auth AA],
NB [auth AL]
COMPLEX III SUBUNIT 1 / CORE 1
COMPLEX I ND3---
COMPLEX I ND6---
COMPLEX I ND4L---
COMPLEX I ND5---
COMPLEX I ND4---
COMPLEX I ND2---
COMPLEX I 18KDA/NDUFS6---
COMPLEX I 13KDA/NDUFS6---
COMPLEX I 15KDA/NDUFS5---
COMPLEX I MWFE/NDUFA1---
DA [auth d],
S
COMPLEX I B8/NDUFA2---
COMPLEX I PSST/NDUFS7---
COMPLEX I B9/NDUFA3---
COMPLEX I B13/NDUFA5---
COMPLEX I B14/NDUFA6---
COMPLEX I 42KDA/NDUFA10---
COMPLEX I B14.7/NDUFA11---
AA [auth a]COMPLEX I B17.2/NDUFA12---
BA [auth b]COMPLEX I B16.6/NDUFA13---
COMPLEX I 30KDA/NDUFS3---
EA [auth e]COMPLEX I B15/NDUFB4---
FA [auth f]COMPLEX I B18/NDUFB7---
GA [auth g]COMPLEX I B22/NDUFB9---
HA [auth h],
UA [auth 9],
VA [auth z]
COMPLEX I PDSW/NDUFB10---
IA [auth i]COMPLEX I ESSS/NDUFB11---
JA [auth j]COMPLEX I KFYI/NDUFC1---
KA [auth k]COMPLEX I B14.5B/NDUFC2---
LA [auth 0]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 1---
MA [auth 1]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 2---
NA [auth 2]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 3---
COMPLEX I 49KDA/NDUFS2---
OA [auth 3],
PA [auth 4]
COMPLEX I UNKNOWN SUBUNIT FRAGMENT 4---
QA [auth 5]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 5---
RA [auth 6]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 6---
SA [auth 7]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 7---
TA [auth 8]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 8---
WA [auth y]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 11---
XA [auth x]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 12---
YA [auth w]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 13---
ZA [auth v]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 14---
COMPLEX I 24KDA/NDUFV2---
BB [auth t]COMPLEX I UNKNOWN SUBUNIT FRAGMENT 16---
DB [auth AB],
OB [auth AM]
COMPLEX III SUBUNIT 2 / CORE 2---
EB [auth AC],
PB [auth AN]
Cytochrome b
FB [auth AD],
QB [auth AO]
COMPLEX III SUBUNIT 4 / CYTOCHROME C1---
GB [auth AE],
RB [auth AP]
Cytochrome b-c1 complex subunit Rieske, mitochondrial---
HB [auth AF],
SB [auth AQ]
COMPLEX III SUBUNIT 7 / 14KDA-
IB [auth AG],
TB [auth AR]
COMPLEX III SUBUNIT 8 / QP-C-
JB [auth AH],
UB [auth AS]
Cytochrome b-c1 complex subunit 6---
KB [auth AI],
VB [auth AT]
Cytochrome b-c1 complex subunit Rieske, mitochondrial---
COMPLEX I 51KDA/NDUFV1---
LB [auth AJ],
WB [auth AU]
COMPLEX III SUBUNIT 9 / 7.2KDA---
MB [auth AK],
XB [auth AV]
COMPLEX III SUBUNIT 10 / 6.4KDA---
COMPLEX I 75KDA/NDUFS1---
COMPLEX I ND1---
COMPLEX I TYKY/NDUFS8---