5IXG

Crystal Structure of Burkholderia cenocepacia BcnB

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth B]	d5ixgb_	All beta proteins	Streptavidin-like	YceI-like	automated matches	automated matches	(Burkholderia cenocepacia PC184 ) [TaxId: 350702 ],	SCOPe (2.08)
B [auth C]	d5ixgc_	All beta proteins	Streptavidin-like	YceI-like	automated matches	automated matches	(Burkholderia cenocepacia PC184 ) [TaxId: 350702 ],	SCOPe (2.08)
C [auth A]	d5ixga_	All beta proteins	Streptavidin-like	YceI-like	automated matches	automated matches	(Burkholderia cenocepacia PC184 ) [TaxId: 350702 ],	SCOPe (2.08)
D	d5ixgd_	All beta proteins	Streptavidin-like	YceI-like	automated matches	automated matches	(Burkholderia cenocepacia PC184 ) [TaxId: 350702 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	YceI-like	8075174	3001989	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	YceI-like	8075174	3001989	SCOP2B (2022-06-29)
C [auth A]	SCOP2 Family	YceI-like	8075173	4000920	SCOP2 (2022-06-29)
C [auth A]	SCOP2 Superfamily	YceI-like	8075174	3001989	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	YceI-like	8075174	3001989	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	PF04264	e5ixgB1	A: beta barrels	X: Lipocalins/Streptavidin	H: Hypothetical protein TT1927B (From Topology)	T: Hypothetical protein TT1927B	F: PF04264	ECOD (1.6)
B [auth C]	PF04264	e5ixgC1	A: beta barrels	X: Lipocalins/Streptavidin	H: Hypothetical protein TT1927B (From Topology)	T: Hypothetical protein TT1927B	F: PF04264	ECOD (1.6)
C [auth A]	PF04264	e5ixgA1	A: beta barrels	X: Lipocalins/Streptavidin	H: Hypothetical protein TT1927B (From Topology)	T: Hypothetical protein TT1927B	F: PF04264	ECOD (1.6)
D	PF04264	e5ixgD1	A: beta barrels	X: Lipocalins/Streptavidin	H: Hypothetical protein TT1927B (From Topology)	T: Hypothetical protein TT1927B	F: PF04264	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth B]	2.40.128.110	Mainly Beta	Beta Barrel	Lipocalin	Lipid/polyisoprenoid-binding, YceI-like	CATH (4.3.0)
B [auth C]	2.40.128.110	Mainly Beta	Beta Barrel	Lipocalin	Lipid/polyisoprenoid-binding, YceI-like	CATH (4.3.0)
C [auth A]	2.40.128.110	Mainly Beta	Beta Barrel	Lipocalin	Lipid/polyisoprenoid-binding, YceI-like	CATH (4.3.0)
D	2.40.128.110	Mainly Beta	Beta Barrel	Lipocalin	Lipid/polyisoprenoid-binding, YceI-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C], C [auth A], D	PF04264	YceI-like domain (YceI)	YceI-like domain	E. coli YceI is a base-induced periplasmic protein [1]. The recent structure of a member of this family shows that it binds to poly-isoprenoid [2]. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lip ...	E. coli YceI is a base-induced periplasmic protein [1]. The recent structure of a member of this family shows that it binds to poly-isoprenoid [2]. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C], C [auth A], D	IPR036761	Lipid/polyisoprenoid-binding, YceI-like superfamily	Homologous Superfamily
A [auth B], B [auth C], C [auth A], D	IPR007372	Lipid/polyisoprenoid-binding, YceI-like	Domain

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth B], B [auth C], C [auth A], D	OPM	Monotopic/peripheral	All beta monotopic/peripheral	Streptavidin-like	Polyisoprenoid-binding protein

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.