5IPS | pdb_00005ips

Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 4

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DThiFe5ipsD2 A: alpha bundlesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF: ThiFECOD (develop294)
DGlyco_hydro_106e5ipsD1 A: alpha bundlesX: Spectrin repeat-likeH: TIM barrelsT: TIM barrelsF: Glyco_hydro_106ECOD (develop294)
BAARP2CNe5ipsB1 A: alpha bundlesX: Spectrin repeat-likeH: Spectrin repeatT: Spectrin repeatF: AARP2CNECOD (develop294)
CFAN1_HTHe5ipsC2 A: alpha bundlesX: Inserted helical domain in fatty acid synthase subunit betaH: Voltage-gated ion channelsT: Voltage-gated ion channelsF: FAN1_HTHECOD (develop294)
Ce5ipsC3 A: alpha bundlesX: SMI1/KNR4-likeH: SMI1/KNR4-likeT: SMI1/KNR4-likeF:ECOD (develop294)
AFAN1_HTHe5ipsA2 A: alpha bundlesX: Inserted helical domain in fatty acid synthase subunit betaH: Voltage-gated ion channelsT: Voltage-gated ion channelsF: FAN1_HTHECOD (develop294)
Ae5ipsA4 A: alpha bundlesX: SMI1/KNR4-likeH: SMI1/KNR4-likeT: SMI1/KNR4-likeF:ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
B, D
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
A, C
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A, C
PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D
Ionotropic glutamate receptor subunit NR2B
A, C
N-methyl-D-aspartate receptor subunit NR1-8a

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D
IPR028082Periplasmic binding protein-like IHomologous Superfamily
B, D
IPR018884Glutamate [NMDA] receptor, epsilon subunit, C-terminalDomain
B, D
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B, D
IPR015683Ionotropic glutamate receptorFamily
B, D
IPR001508Ionotropic glutamate receptor, metazoaFamily
B, D
IPR001320Ionotropic glutamate receptor, C-terminalDomain
B, D
IPR001828Receptor, ligand binding regionDomain
A, C
IPR001320Ionotropic glutamate receptor, C-terminalDomain
A, C
IPR028082Periplasmic binding protein-like IHomologous Superfamily
A, C
IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
A, C
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A, C
IPR015683Ionotropic glutamate receptorFamily
A, C
IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain
A, C
IPR001508Ionotropic glutamate receptor, metazoaFamily
A, C
IPR001828Receptor, ligand binding regionDomain

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
A, B, C, D
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluN1a/GluN2B NMDA receptor