5IPP | pdb_00005ipp

Structure of Bacillus NanoRNase A active site mutant bound to a mononucleotide

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rogdi_lz	e5ippB1	A: alpha bundles	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (develop294)
C	Rogdi_lz	e5ippC1	A: alpha bundles	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (develop294)
D	Rogdi_lz	e5ippD1	A: alpha bundles	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (develop294)
A	Rogdi_lz	e5ippA1	A: alpha bundles	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Chelatase-like	F: Rogdi_lz	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (4.3.0)
B	3.10.310.30	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (4.3.0)
C	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (4.3.0)
C	3.10.310.30	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (4.3.0)
D	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (4.3.0)
D	3.10.310.30	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (4.3.0)
A	3.90.1640.10	Alpha Beta	Alpha-Beta Complex	inorganic pyrophosphatase (n-terminal core)	inorganic pyrophosphatase (n-terminal core)	CATH (4.3.0)
A	3.10.310.30	Alpha Beta	Roll	Diaminopimelate Epimerase	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF02272	DHHA1 domain (DHHA1)	DHHA1 domain	This domain is often found adjacent to the DHH domain Pfam:PF01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members [1]. This domain is also found in alanyl tRNA synthetase e.g. Swiss:P00957, suggest ...	This domain is often found adjacent to the DHH domain Pfam:PF01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members [1]. This domain is also found in alanyl tRNA synthetase e.g. Swiss:P00957, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.	Domain
A, B, C, D	PF01368	DHH family, N-terminal domain (DHH)	DHH family, N-terminal domain	It is predicted that this family of proteins all perform a phosphoesterase function. This domain is found at the N-terminal of the single stranded DNA exonuclease RecJ. It shows an alpha-beta configuration [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Bifunctional oligoribonuclease and PAP phosphatase NrnA	hydrolase activity, acting on ester bonds nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity exonuclease activity catalytic activity binding nucleic acid binding phosphoric ester hydrolase activity nucleotidase activity phosphatase activity 3'(2'),5'-bisphosphate nucleotidase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR051319	Bifunctional oligoribonuclease/pAp-phosphatase and c-di-AMP PDE	Family
A, B, C, D	IPR001667	DDH domain	Domain
A, B, C, D	IPR038763	DHH phosphoesterase superfamily	Homologous Superfamily
A, B, C, D	IPR003156	DHHA1 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.