5IOV | pdb_00005iov

Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine/Ro25-6981-bound conformation

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DThiFe5iovD1 A: a/b three-layered sandwichesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF: ThiFECOD (v294.1)
C [auth B]ThiFe5iovB1 A: a/b three-layered sandwichesX: omega toxin-likeH: omega toxin-relatedT: omega toxin-relatedF: ThiFECOD (v294.1)
B [auth C]FAN1_HTHe5iovC1 A: a/b three-layered sandwichesX: Inserted helical domain in fatty acid synthase subunit betaH: Voltage-gated ion channelsT: Voltage-gated ion channelsF: FAN1_HTHECOD (v294.1)
AFAN1_HTHe5iovA1 A: a/b three-layered sandwichesX: Inserted helical domain in fatty acid synthase subunit betaH: Voltage-gated ion channelsT: Voltage-gated ion channelsF: FAN1_HTHECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth B],
D		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
C [auth B],
D		PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
C [auth B],
D		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
A,
B [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A,
B [auth C]		PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
A,
B [auth C]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth B],
D		Ionotropic glutamate receptor subunit NR2B
A,
B [auth C]		N-methyl-D-aspartate receptor subunit NR1-8a

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth B],
D		IPR028082Periplasmic binding protein-like IHomologous Superfamily
C [auth B],
D		IPR018884Glutamate [NMDA] receptor, epsilon subunit, C-terminalDomain
C [auth B],
D		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
C [auth B],
D		IPR015683Ionotropic glutamate receptorFamily
C [auth B],
D		IPR001508Ionotropic glutamate receptor, metazoaFamily
C [auth B],
D		IPR001320Ionotropic glutamate receptor, C-terminalDomain
C [auth B],
D		IPR001828Receptor, ligand binding regionDomain
A,
B [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
B [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
B [auth C]		IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
A,
B [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
B [auth C]		IPR015683Ionotropic glutamate receptorFamily
A,
B [auth C]		IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain
A,
B [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
B [auth C]		IPR001828Receptor, ligand binding regionDomain

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluN1a/GluN2B NMDA receptor