5IE9

Crystal structure of the Bacillus-conserved MazG protein, a nucleotide pyrophosphohydrolase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5ie9d_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	automated matches	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
A	d5ie9a_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	automated matches	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
B	d5ie9b_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	automated matches	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)
C	d5ie9c_	All alpha proteins	all-alpha NTP pyrophosphatases	all-alpha NTP pyrophosphatases	MazG-like	automated matches	(Bacillus cereus ) [TaxId: 1396 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8081117	3001174	SCOP2B (2022-06-29)
A	SCOP2 Family	MazG-like	8081116	4003078	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	all-alpha NTP pyrophosphatases	8081117	3001174	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8081117	3001174	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	all-alpha NTP pyrophosphatases	8081117	3001174	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	MazG_1	e5ie9D1	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)
A	MazG_1	e5ie9A1	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)
B	MazG_1	e5ie9B1	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)
C	MazG_1	e5ie9C1	A: alpha bundles	X: all-alpha NTP pyrophosphatases (From Homology)	H: all-alpha NTP pyrophosphatases	T: MazG-related	F: MazG_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)
A	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)
B	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)
C	1.10.287.1080	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	MazG-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03819	MazG nucleotide pyrophosphohydrolase domain (MazG)	MazG nucleotide pyrophosphohydrolase domain	This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in ...	This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in some proteins as well as associated with Pfam:PF00590. This domain is clearly related to Pfam:PF01503 another pyrophosphohydrolase involved in histidine biosynthesis. This family may be structurally related to the NUDIX domain Pfam:PF00293 (Bateman A pers. obs.).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Nucleotide pyrophosphohydrolase	cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012359	NTP pyrophosphohydrolase MazG-related, YpjD	Family
A, B, C, D	IPR004518	NTP pyrophosphohydrolase MazG-like domain	Domain
A, B, C, D	IPR047046	NTP pyrophosphohydrolase MazG-related, YpjD/YvdC	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.