5I72 | pdb_00005i72

Crystal structure of the oligomeric form of the Lassa virus matrix protein Z

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	P-11 zinc finger-like	8045015	4004256	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RING/U-box like	8054045	3000160	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	RING/U-box like	8054045	3000160	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40, Beta-prop_IFT122_1st	e5i72A1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: WD40, Beta-prop_IFT122_1st	ECOD (v294.1)
B	WD40, Beta-prop_IFT122_1st	e5i72B1	A: a/b three-layered sandwiches	X: HAD domain-like	H: beta-propeller	T: 8-bladed	F: WD40, Beta-prop_IFT122_1st	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF03854	P-11 zinc finger (zf-P11)	P-11 zinc finger	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	RING finger protein Z	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding RNA binding nucleic acid binding	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle biological process involved in interspecies interaction between organisms non-lytic viral release biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell viral budding from plasma membrane viral release from host cell	virion component cellular anatomical structure membrane host cell plasma membrane host cellular component host cell part host cell membrane other organism part host intracellular part host cell perinuclear region of cytoplasm host cell cytoplasm host intracellular region host cell cytoplasm part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR038485	Protein Z, RING-type zinc finger superfamily	Homologous Superfamily
A, B	IPR024183	RING finger protein Z, arenaviridae	Family
A, B	IPR003224	RING finger protein Z, zinc finger	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.