5HAX | pdb_00005hax

Crystal structure of Chaetomium thermophilum Nup170 NTD-Nup53 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Adaptor nucleoporins Nup170/Nup155 NTD-like	8051247	4007265	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleoporin beta-propeller domain	8090968	3000456	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5haxA1	A: Inserted helical domain in fatty acid synthase subunit beta	X: Voltage-gated ion channels	H: Voltage-gated ion channels	T: Tubulin_C	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.58.1780	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08801	Nup133 N terminal like (Nucleoporin_N)	Nup133 N terminal like	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Nucleoporin NUP53	-	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport establishment of protein localization protein transport intracellular protein localization	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore nuclear membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore nuclear membrane membrane organelle membrane
A	Nucleoporin NUP170	structural molecule activity structural constituent of nuclear pore	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport cellular component organization organelle organization chromosome organization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport cellular component organization organelle organization chromosome organization cellular process cellular component organization or biogenesis transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery cellular localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope protein localization to organelle intracellular protein localization protein localization to nuclear inner membrane nuclear pore organization protein-containing complex organization pore complex assembly cellular component biogenesis nuclear pore complex assembly nucleus organization cellular component assembly protein-containing complex assembly establishment of protein localization nucleocytoplasmic transport nuclear transport intracellular transport import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell protein import into nucleus intracellular protein transport RNA export from nucleus nuclear export	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane nuclear pore inner ring membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane nuclear pore inner ring protein-containing complex nuclear protein-containing complex nuclear pore

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A	IPR042537	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Homologous Superfamily
A	IPR042533	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Homologous Superfamily
A	IPR042538	Nucleoporin, Nup155-like, C-terminal, subdomain 3	Homologous Superfamily
A	IPR014908	Nucleoporin, Nup133/Nup155-like, N-terminal	Domain
A	IPR004870	Nucleoporin, Nup155-like	Family
A	IPR007187	Nucleoporin, Nup133/Nup155-like, C-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.