5GIP
Crystal structure of box C/D RNP with 13 nt guide regions and 11 nt substrates
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | L30e-like | 8063950 | 3001739 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | L30e-like | 8063950 | 3001739 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | L30e-like | 8063950 | 3001739 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | L30e-like | 8063950 | 3001739 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Nop_C | e5gipA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
A | Nop_N | e5gipA2 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
A | PRK14552 | e5gipA3 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PRK14552 | ECOD (1.6) |
B | Nop_C | e5gipB2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
B | Nop_N | e5gipB1 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
B | PRK14552 | e5gipB3 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PRK14552 | ECOD (1.6) |
K | Nop_C | e5gipK2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
K | Nop_N | e5gipK1 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
K | PRK14552 | e5gipK3 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PRK14552 | ECOD (1.6) |
L | Nop_C | e5gipL3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
L | Nop_N | e5gipL2 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
L | PRK14552 | e5gipL1 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PRK14552 | ECOD (1.6) |
E | Fibrillarin | e5gipE1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Fibrillarin | ECOD (1.6) |
F | Fibrillarin | e5gipF1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Fibrillarin | ECOD (1.6) |
O | Fibrillarin | e5gipO1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Fibrillarin | ECOD (1.6) |
P | Fibrillarin | e5gipP1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Fibrillarin | ECOD (1.6) |
D | Ribosomal_L7Ae_1 | e5gipD1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
M | Ribosomal_L7Ae_1 | e5gipM1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
N | Ribosomal_L7Ae_1 | e5gipN1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
C | Ribosomal_L7Ae_1 | e5gipC1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21572 | Archaeal Nop5/56-rel, N-terminal domain (Nop5_56-rel_N_Arc) | Archaeal Nop5/56-rel, N-terminal domain | This domain is found at the N-terminal end of a group of archaeal proteins, including Uncharacterized NOP5 family protein MJ0694 from Methanocaldococcus jannaschii. This domain interacts with fibrillarin, the other subunit of a complex that is critic ... | Domain | |
PF01798 | snoRNA binding domain, fibrillarin (Nop) | snoRNA binding domain, fibrillarin | - | Family | |
PF01269 | Fibrillarin (Fibrillarin) | Fibrillarin | - | Domain | |
PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042239 | Nop, C-terminal domain | Homologous Superfamily | |
IPR036070 | Nop domain superfamily | Homologous Superfamily | |
IPR045056 | Nucleolar protein Nop56/Nop58 | Family | |
IPR002687 | Nop domain | Domain | |
IPR048896 | Nop5/56-related, N-terminal domain | Domain | |
IPR012976 | NOSIC | Domain | |
IPR047099 | Nop5, N-terminal domain superfamily | Homologous Superfamily | |
IPR000692 | rRNA 2'-O-methyltransferase fibrillarin-like | Family | |
IPR020813 | Fibrillarin, conserved site | Conserved Site | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR004038 | Ribosomal protein eL8/eL30/eS12/Gadd45 | Domain | |
IPR022481 | Large ribosomal subunit protein eL8, archaea | Family | |
IPR004037 | Large ribosomal subunit protein eL8-like, conserved site | Conserved Site | |
IPR029064 | Ribosomal protein eL30-like superfamily | Homologous Superfamily | |
IPR018492 | Ribosomal protein eL8/Nhp2 family | Family |