Annotations: 5G4F

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth P]	SCOP2B Superfamily	Cdc48 domain 2-like	8034906	3000725	SCOP2B (2022-06-29)
F [auth P]	SCOP2B Superfamily	ADC-like	8042536	3001132	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ADC-like	8042536	3001132	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cdc48 domain 2-like	8034906	3000725	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cdc48 domain 2-like	8034906	3000725	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ADC-like	8042536	3001132	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ADC-like	8042536	3001132	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cdc48 domain 2-like	8034906	3000725	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cdc48 domain 2-like	8034906	3000725	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ADC-like	8042536	3001132	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cdc48 domain 2-like	8034906	3000725	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ADC-like	8042536	3001132	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth P]	DUF5110	e5g4fP1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: DUF5110	ECOD (v294.1)
E	DUF5110	e5g4fE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: DUF5110	ECOD (v294.1)
D	DUF5110	e5g4fD1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: DUF5110	ECOD (v294.1)
C	DUF5110	e5g4fC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: DUF5110	ECOD (v294.1)
B	DUF5110	e5g4fB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: DUF5110	ECOD (v294.1)
A	DUF5110	e5g4fA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: DUF5110	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F [auth P]	PF02933	Cell division protein 48 (CDC48), domain 2 (CDC48_2)	Cell division protein 48 (CDC48), domain 2	This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...	This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	PF02359	Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)	Cell division protein 48 (CDC48), N-terminal domain	This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...	This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F [auth P]	VCP-LIKE ATPASE	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR029067	CDC48 domain 2-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR041569	AAA ATPase, AAA+ lid domain	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR004201	CDC48, domain 2	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR050168	AAA ATPase domain-containing protein	Family
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR005938	AAA ATPase, CDC48 family	Family
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR003338	CDC48, N-terminal subdomain	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR003593	AAA+ ATPase domain	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR003959	ATPase, AAA-type, core	Domain
A, B, C, D, E, A, B, C, D, E, F [auth P]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.