5G2E

Structure of the Nap1 H2A H2B complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	NAP-like	8037493	3000895	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Core histone-like	8041278	3001387	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Core histone-like	8041279	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NAP	e5g2eA1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
B	NAP	e5g2eB1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
E	NAP	e5g2eE1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
F	NAP	e5g2eF1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
I	NAP	e5g2eI1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
J	NAP	e5g2eJ1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
M	NAP	e5g2eM1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
N	NAP	e5g2eN1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
Q	NAP	e5g2eQ1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
R	NAP	e5g2eR1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
U	NAP	e5g2eU1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
V	NAP	e5g2eV1	A: a+b two layers	X: NAP-like (From Topology)	H: NAP-like (From Topology)	T: NAP-like	F: NAP	ECOD (1.6)
C	Histone_1	e5g2eC1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
G	Histone_1	e5g2eG1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
K	Histone_1	e5g2eK1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
O	Histone_1	e5g2eO1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
S	Histone_1	e5g2eS1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
W	Histone_1	e5g2eW1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone_1	ECOD (1.6)
D	Histone	e5g2eD1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
H	Histone	e5g2eH1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
L	Histone	e5g2eL1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
P	Histone	e5g2eP1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
T	Histone	e5g2eT1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)
X	Histone	e5g2eX1	A: alpha arrays	X: Histone-like	H: Histone-related	T: Histone	F: Histone	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E, F, I A, B, E, F, I, J, M, N, Q, R, U, V	PF00956	Nucleosome assembly protein (NAP) (NAP)	Nucleosome assembly protein (NAP)	-	Family
C, G, K, O, S C, G, K, O, S, W	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family
C, G, K, O, S C, G, K, O, S, W	PF00125	Core histone H2A/H2B/H3/H4 (Histone)	Core histone H2A/H2B/H3/H4	-	Domain
D, H, L, P, T D, H, L, P, T, X	PF00125	Core histone H2A/H2B/H3/H4 (Histone)	Core histone H2A/H2B/H3/H4	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, E, F, I A, B, E, F, I, J, M, N, Q, R, U, V	NUCLEOSOME ASSEMBLY PROTEIN	protein binding binding histone binding protein-containing complex binding chromatin binding cyclin binding DNA binding organic cyclic compound binding nucleic acid binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity unfolded protein binding protein binding binding histone binding protein-containing complex binding chromatin binding cyclin binding DNA binding organic cyclic compound binding nucleic acid binding enzyme regulator activity enzyme activator activity molecular function activator activity molecular function regulator activity unfolded protein binding identical protein binding	reproductive process in single-celled organism reproductive process budding cell bud growth growth cellular process cell division cell budding asexual reproduction protein localization localization cellular localization protein localization to cell division site after cytokinesis cellular macromolecule localization macromolecule localization reproductive process in single-celled organism reproductive process budding cell bud growth growth cellular process cell division cell budding asexual reproduction protein localization localization cellular localization protein localization to cell division site after cytokinesis cellular macromolecule localization macromolecule localization protein localization to cell division site cellular component disassembly protein-containing complex organization protein-DNA complex disassembly protein-containing complex disassembly protein-DNA complex organization cellular component organization chromatin organization nucleosome disassembly chromatin remodeling cellular component organization or biogenesis nucleosome organization septin ring organization organelle assembly non-membrane-bounded organelle assembly septin ring assembly cellular component biogenesis organelle organization cellular component assembly septin cytoskeleton organization protein-containing complex assembly cytoskeleton organization protein-DNA complex assembly nucleosome assembly establishment of protein localization NLS-bearing protein import into nucleus nitrogen compound transport nucleocytoplasmic transport transport nuclear transport import into nucleus establishment of localization in cell protein import into nucleus organic substance transport intracellular transport protein localization to nucleus establishment of localization establishment of protein localization to organelle protein transport protein localization to organelle intracellular protein transport septum digestion after cytokinesis positive regulation of organelle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization microtubule cytoskeleton organization positive regulation of biological process regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly microtubule polymerization or depolymerization positive regulation of protein polymerization positive regulation of cellular process protein polymerization regulation of biological process positive regulation of microtubule polymerization or depolymerization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization biological regulation regulation of microtubule-based process microtubule polymerization positive regulation of supramolecular fiber organization regulation of cellular component biogenesis regulation of organelle organization positive regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization microtubule-based process supramolecular fiber organization regulation of microtubule cytoskeleton organization ribosome biogenesis ribonucleoprotein complex biogenesis ribosomal small subunit biogenesis positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process DNA-templated transcription positive regulation of metabolic process regulation of RNA metabolic process transcription by RNA polymerase II organic substance biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II regulation of DNA-templated transcription elongation positive regulation of nucleobase-containing compound metabolic process regulation of transcription elongation by RNA polymerase II cellular metabolic process primary metabolic process regulation of cellular metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process transcription elongation by RNA polymerase II cellular biosynthetic process positive regulation of DNA-templated transcription positive regulation of transcription elongation by RNA polymerase II RNA metabolic process positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process positive regulation of biosynthetic process positive regulation of DNA-templated transcription, elongation regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process DNA-templated transcription elongation positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process	cell division site cellular anatomical entity intracellular anatomical structure cytoplasm protein-containing complex cellular bud neck cellular bud cleavage apparatus septin structure transferase complex protein kinase complex cell periphery intracellular organelle cytoskeleton septin cytoskeleton cell division site cellular anatomical entity intracellular anatomical structure cytoplasm protein-containing complex cellular bud neck cellular bud cleavage apparatus septin structure transferase complex protein kinase complex cell periphery intracellular organelle cytoskeleton septin cytoskeleton non-membrane-bounded organelle cell cortex catalytic complex septin ring transferase complex, transferring phosphorus-containing groups Gin4 complex organelle cellular bud neck septin structure cellular bud neck septin ring intracellular non-membrane-bounded organelle serine/threonine protein kinase complex site of polarized growth protein-DNA complex chromatin chromosome cellular bud neck septin collar septin collar membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, G, K, O, S C, G, K, O, S, W	HISTONE H2A TYPE 1	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D, H, L, P, T D, H, L, P, T, X	HISTONE H2B 1.1	DNA binding binding organic cyclic compound binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome chromatin chromosome cellular anatomical entity intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E, F, I A, B, E, F, I, J, M, N, Q, R, U, V	IPR002164	Nucleosome assembly protein (NAP)	Family
A, B, E, F, I A, B, E, F, I, J, M, N, Q, R, U, V	IPR037231	NAP-like superfamily	Homologous Superfamily
C, G, K, O, S C, G, K, O, S, W	IPR009072	Histone-fold	Homologous Superfamily
C, G, K, O, S C, G, K, O, S, W	IPR007125	Histone H2A/H2B/H3	Domain
C, G, K, O, S C, G, K, O, S, W	IPR002119	Histone H2A	Family
C, G, K, O, S C, G, K, O, S, W	IPR032454	Histone H2A, C-terminal domain	Domain
C, G, K, O, S C, G, K, O, S, W	IPR032458	Histone H2A conserved site	Conserved Site
D, H, L, P, T D, H, L, P, T, X	IPR009072	Histone-fold	Homologous Superfamily
D, H, L, P, T D, H, L, P, T, X	IPR007125	Histone H2A/H2B/H3	Domain
D, H, L, P, T D, H, L, P, T, X	IPR000558	Histone H2B	Family