5FMS | pdb_00005fms

mmIFT52 N-terminal domain

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8091278	3001405	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Class I glutamine amidotransferase-like	8091278	3001405	SCOP2B (2022-06-29)
A	SCOP2 Family	IFT52 N-terminal domain-like	8045648	4004591	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Class I glutamine amidotransferase-like	8091278	3001405	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	ABC_transp_aux	e5fmsC1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Class I glutamine amidotransferase-like	F: ABC_transp_aux	ECOD (1.6)
B	ABC_transp_aux	e5fmsB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Class I glutamine amidotransferase-like	F: ABC_transp_aux	ECOD (1.6)
A	ABC_transp_aux	e5fmsA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Class I glutamine amidotransferase-like	F: ABC_transp_aux	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF23355	IFT52 GIFT domain (IFT52_GIFT)	IFT52 GIFT domain	This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins. Intraflagellar transport protein 52 homolog from human is included in this entry, ...	This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins. Intraflagellar transport protein 52 homolog from human is included in this entry, which is essential for anterograde complex integrity and for the biosynthesis and maintenance of cilia [1]. This domain has been described as the GIFT domain in IFT52 whose function is not yet clear [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	INTRAFLAGELLAR TRANSPORT PROTEIN 52 HOMOLOG	-	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation smoothened signaling pathway cell communication cellular process signal transduction developmental process dorsal/ventral pattern formation multicellular organism development cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation smoothened signaling pathway cell communication cellular process signal transduction developmental process dorsal/ventral pattern formation multicellular organism development multicellular organismal process anatomical structure development pattern specification process regionalization regulation of protein maturation regulation of primary metabolic process protein maturation regulation of proteolysis proteolysis protein metabolic process regulation of biosynthetic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of protein processing protein processing metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation tube morphogenesis embryo development ending in birth or egg hatching epithelial tube morphogenesis system development morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium nervous system development tissue development tissue morphogenesis anatomical structure morphogenesis neural tube formation anatomical structure formation involved in morphogenesis organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly non-motile cilium assembly determination of bilateral symmetry determination of left/right symmetry left/right pattern formation specification of symmetry cellular localization transport intracellular transport establishment of localization localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process intraciliary transport intraciliary anterograde transport negative regulation of cell population proliferation cell population proliferation negative regulation of biological process regulation of cell population proliferation negative regulation of cellular process regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation heart morphogenesis embryonic heart tube development embryonic heart tube morphogenesis heart looping animal organ morphogenesis embryonic organ development embryonic organ morphogenesis heart development animal organ development determination of heart left/right asymmetry circulatory system development limb development appendage development embryonic limb morphogenesis embryonic appendage morphogenesis appendage morphogenesis embryonic digit morphogenesis limb morphogenesis	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection dendrite terminus somatodendritic compartment dendrite dendritic tree neuron projection non-motile cilium photoreceptor cell cilium 9+0 non-motile cilium membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection dendrite terminus somatodendritic compartment dendrite dendritic tree neuron projection non-motile cilium photoreceptor cell cilium 9+0 non-motile cilium ciliary transition zone photoreceptor connecting cilium intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton centriole ciliary tip ciliary base ciliary basal body intraciliary transport particle B protein-containing complex intraciliary transport particle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR048643	Intraflagellar transport protein 52, C-terminal domain	Domain
A, B, C	IPR055460	IFT52, central domain	Domain
A, B, C	IPR055458	IFT52, GIFT domain	Domain
A, B, C	IPR039975	Intraflagellar transport protein 52 homolog	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.