5FBY | pdb_00005fby

Crystal structure of ctSPD


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCaspase-like 8104077 3001096 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAWSe5fbyA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: AWSECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03568Separin, protease domain (Separin_C)Separin, protease domainThis entry represents the C-terminal caspase-like protease domain found in Separin. Separin is a cysteine protease critical for chromosome segregation during mitosis and meiosis, exhibits a conserved multi-domain architecture across eukaryotes. Separ ...This entry represents the C-terminal caspase-like protease domain found in Separin. Separin is a cysteine protease critical for chromosome segregation during mitosis and meiosis, exhibits a conserved multi-domain architecture across eukaryotes. Separin contains an N-terminal HEAT/ARM repeats which allows the protein to bind regulatory partners like securin and cyclin B1; followed by a TPR-like domain which binds phosphorylated residues and a C-terminal caspase-like protease domain which contains a catalytic triad (Cys-His-Asp) and recognises substrates with a conserved arginine at the P1 position [1,3]. The C-terminal domain is structurally related to caspases but includes a unique substrate-binding subdomain (PPD) [2,4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
separase
cleaved peptide---

InterPro: Protein Family Classification InterPro Database Homepage