5F93

Blood group antigen binding adhesin BabA of Helicobacter pylori strain A730 in complex with blood group H Lewis b hexasaccharide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
SAbDab Antibody Annotation
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E [auth C]	d5f93c1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
E [auth C]	d5f93c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
E [auth C]	d5f93c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
F [auth D]	d5f93d1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
F [auth D]	d5f93d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
F [auth D]	d5f93d3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G [auth F]	d5f93f1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G [auth F]	d5f93f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
G [auth F]	d5f93f3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
H	d5f93h1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	V set domains (antibody variable domain-like)	automated matches	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
H	d5f93h2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)
H	d5f93h3	Artifacts	Tags	Tags	Tags	N-terminal Tags	Llama (Lama glama ) [TaxId: 9844 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF18304	e5f93A1	A: alpha bundles	X: SabA N-terminal extracellular adhesion domain (From Topology)	H: SabA N-terminal extracellular adhesion domain (From Topology)	T: SabA N-terminal extracellular adhesion domain	F: PF18304	ECOD (1.6)
B	PF18304	e5f93B1	A: alpha bundles	X: SabA N-terminal extracellular adhesion domain (From Topology)	H: SabA N-terminal extracellular adhesion domain (From Topology)	T: SabA N-terminal extracellular adhesion domain	F: PF18304	ECOD (1.6)
C [auth E]	PF18304	e5f93E1	A: alpha bundles	X: SabA N-terminal extracellular adhesion domain (From Topology)	H: SabA N-terminal extracellular adhesion domain (From Topology)	T: SabA N-terminal extracellular adhesion domain	F: PF18304	ECOD (1.6)
D [auth G]	PF18304	e5f93G1	A: alpha bundles	X: SabA N-terminal extracellular adhesion domain (From Topology)	H: SabA N-terminal extracellular adhesion domain (From Topology)	T: SabA N-terminal extracellular adhesion domain	F: PF18304	ECOD (1.6)
E [auth C]	PF07686	e5f93C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
F [auth D]	PF07686	e5f93D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
G [auth F]	PF07686	e5f93F1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)
H	PF07686	e5f93H1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF07686	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E [auth C]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
F [auth D]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
G [auth F]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
H	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
E [auth C], F [auth D], G [auth F], H	Heavy Chain	IGHV1	-	adhesin binding fucosylated histo-blood group antigen,adhesin,adhesin binding fucosylated histo-blood group antigen	SAbDab (2024-05-10)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth E], D [auth G]	PF18304	SabA N-terminal extracellular adhesion domain (SabA_adhesion)	SabA N-terminal extracellular adhesion domain	This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino ...	This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth E], D [auth G]	IPR040838	SabA, N-terminal extracellular adhesion domain	Domain
A, B, C [auth E], D [auth G]	IPR040838	SabA, N-terminal extracellular adhesion domain	Domain
A, B, C [auth E], D [auth G]	IPR002718	Outer membrane protein, Helicobacter	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.