Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with blood group A Lewis b pentasaccharide
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d5f7nc1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| C | d5f7nc2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| C | d5f7nc3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| D | d5f7nd1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| D | d5f7nd2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| D | d5f7nd3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Cytochrom_B559,Cytochrom_B559a | e5f7nC1 | A: a/b three-layered sandwiches | X: ACP-like | H: Acyl-carrier protein (ACP) | T: Acyl-carrier protein (ACP) | F: Cytochrom_B559,Cytochrom_B559a | ECOD (v294.1) |
| D | Cytochrom_B559,Cytochrom_B559a | e5f7nD1 | A: a/b three-layered sandwiches | X: ACP-like | H: Acyl-carrier protein (ACP) | T: Acyl-carrier protein (ACP) | F: Cytochrom_B559,Cytochrom_B559a | ECOD (v294.1) |
| A | Cytochrom_B559,Cytochrom_B559a | e5f7nA1 | A: a/b three-layered sandwiches | X: ACP-like | H: Acyl-carrier protein (ACP) | T: Acyl-carrier protein (ACP) | F: Cytochrom_B559,Cytochrom_B559a | ECOD (v294.1) |
| B | Cytochrom_B559,Cytochrom_B559a | e5f7nB1 | A: a/b three-layered sandwiches | X: ACP-like | H: Acyl-carrier protein (ACP) | T: Acyl-carrier protein (ACP) | F: Cytochrom_B559,Cytochrom_B559a | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| Heavy Chain | IGHV1 | - | adhesin binding fucosylated histo-blood group antigen | SAbDab (2026-03-27) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR040838 | SabA, N-terminal extracellular adhesion domain | Domain | |
| IPR002718 | Outer membrane protein, Helicobacter | Family |
