5F7K

Blood group antigen binding adhesin BabA of Helicobacter pylori strain 17875 in complex with Nanobody Nb-ER19

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth C]d5f7kc1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
B [auth C]d5f7kc2 Artifacts Tags Tags Tags C-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd5f7kd1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)
Dd5f7kd2 Artifacts Tags Tags Tags C-terminal Tags Llama (Lama glama ) [TaxId: 9844 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth B]PF18304e5f7kB1 A: alpha bundlesX: SabA N-terminal extracellular adhesion domain (From Topology)H: SabA N-terminal extracellular adhesion domain (From Topology)T: SabA N-terminal extracellular adhesion domainF: PF18304ECOD (1.6)
APF18304e5f7kA1 A: alpha bundlesX: SabA N-terminal extracellular adhesion domain (From Topology)H: SabA N-terminal extracellular adhesion domain (From Topology)T: SabA N-terminal extracellular adhesion domainF: PF18304ECOD (1.6)
B [auth C]PF07686e5f7kC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)
DPF07686e5f7kD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF07686ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth C]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth C],
D		Heavy ChainIGHV1 -adhesin binding fucosylated histo-blood group antigenSAbDab (2024-06-07)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
C [auth B]		IPR040838SabA, N-terminal extracellular adhesion domainDomain
A,
C [auth B]		IPR002718Outer membrane protein, HelicobacterFamily