5E4G | pdb_00005e4g

Crystal structure of human growth differentiation factor 11 (GDF-11)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5e4ga_	Small proteins	Cystine-knot cytokines	Cystine-knot cytokines	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Transforming growth factor (TGF)-beta	8048098	4003433	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cystine-knot cytokines	8089948	3000846	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Como_SCP	e5e4gA1	A: alpha bundles	X: HTH	H: Baseplate wedge protein gp6 helical domain	T: Baseplate wedge protein gp6 helical domain	F: Como_SCP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.10.90.10	Mainly Beta	Ribbon	Cystine Knot Cytokines, subunit B	Cystine-knot cytokines	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00019	Transforming growth factor beta like domain (TGF_beta)	Transforming growth factor beta like domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Growth/differentiation factor 11	molecular function activator activity molecular function regulator activity signaling receptor regulator activity growth factor activity receptor ligand activity signaling receptor activator activity cytokine activity	cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette cellular response to stimulus positive regulation of cell communication cell surface receptor protein serine/threonine kinase signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction intracellular signaling cassette signal transduction enzyme-linked receptor protein signaling pathway positive regulation of cellular process regulation of biological process regulation of signaling cell surface receptor signaling pathway biological regulation positive regulation of intracellular signal transduction positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway SMAD protein signal transduction regulation of response to stimulus regulation of cell communication cellular process regulation of SMAD protein signal transduction positive regulation of SMAD protein signal transduction positive regulation of signaling developmental process anatomical structure development tissue development mesoderm development multicellular organism development multicellular organismal process skeletal system development system development cell population proliferation activin receptor signaling pathway transforming growth factor beta receptor superfamily signaling pathway cellular developmental process cell development epithelial cell differentiation pancreas development cell differentiation endocrine pancreas development cell maturation type B pancreatic cell differentiation epithelium development type B pancreatic cell maturation endocrine system development animal organ development developmental maturation type B pancreatic cell development epithelial cell development anatomical structure maturation epithelial cell maturation enteroendocrine cell differentiation regulation of developmental process sensory organ development negative regulation of biological process retina development in camera-type eye visual system development neural retina development regulation of cell differentiation central nervous system neuron differentiation neurogenesis regulation of amacrine cell differentiation amacrine cell differentiation neuron differentiation negative regulation of cellular process negative regulation of cell differentiation sensory system development eye development negative regulation of developmental process negative regulation of amacrine cell differentiation nervous system development generation of neurons central nervous system development camera-type eye development negative regulation of neuron differentiation regulation of neuron differentiation ureteric bud development mesonephric epithelium development kidney epithelium development mesonephros development tube development renal system development kidney development mesonephric tubule development negative regulation of cell population proliferation regulation of cell population proliferation camera-type eye morphogenesis eye morphogenesis anatomical structure morphogenesis sensory organ morphogenesis animal organ morphogenesis metanephros development roof of mouth development anterior/posterior pattern specification pattern specification process regionalization spinal cord development spinal cord anterior/posterior patterning spinal cord patterning cellular response to growth factor stimulus cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor	protein-containing complex cellular anatomical structure extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR029034	Cystine-knot cytokine	Homologous Superfamily
A	IPR017948	Transforming growth factor beta, conserved site	Conserved Site
A	IPR015615	Transforming growth factor-beta-like	Family
A	IPR001111	TGF-beta, propeptide	Domain
A	IPR001839	Transforming growth factor-beta, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O95390	age-related macular degeneration Currarino triad myelodysplastic syndrome pituitary cancer atrial fibrillation lung cancer osteosarcoma wet macular degeneration beta thalassemia medulloblastoma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.