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 5DJW | pdb_00005djw

Crystal structure of Family 31 alpha-glucosidase (BT_3299) from Bacteroides thetaiotaomicron

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B Superfamily(Trans)glycosidases 8090450 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGalactose mutarotase-like 8090448 3000035 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyYicI C-terminal domain-like 8090446 3000267 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8090452 3001528 SCOP2B (2022-06-29)
ASCOP2 FamilyYicI C-terminal domain-like 8046525 4003108 SCOP2 (2022-06-29)
ASCOP2 FamilyYicI N-terminal domain-like 8090447 4003123 SCOP2 (2022-06-29)
ASCOP2 FamilyYicI catalytic domain-like 8090449 4003298 SCOP2 (2022-06-29)
ASCOP2 FamilyYicI post-catalytic domain-like 8090451 4003233 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYicI C-terminal domain-like 8090446 3000267 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyGalactose mutarotase-like 8090448 3000035 SCOP2 (2022-06-29)
ASCOP2 Superfamily(Trans)glycosidases 8090450 3000313 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyGlycosyl hydrolase domain-like 8090452 3001528 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRRM_1e5djwB1 A: alpha arraysX: SH3H: SH3T: SH3F: RRM_1ECOD (v295.2)
ASBP_bac_1e5djwA1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: SBP_bac_1ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21365Glycosyl hydrolase family 31 C-terminal domain (Glyco_hydro_31_3rd)Glycosyl hydrolase family 31 C-terminal domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry represents the 3rd beta sandwich domain. Domain
A, B
PF17137Glycoside hydrolase family 31 C-terminal domain (GH31_C)Glycoside hydrolase family 31 C-terminal domainThis entry represents a C-terminal domain of approximately 70 residues found in glycoside hydrolase family 31 (GH31) enzymes. The domain is found in both bacteria and eukaryotes, including Bacteroidota, Bacillota, Pseudomonadota and fungi. It occurs ...This entry represents a C-terminal domain of approximately 70 residues found in glycoside hydrolase family 31 (GH31) enzymes. The domain is found in both bacteria and eukaryotes, including Bacteroidota, Bacillota, Pseudomonadota and fungi. It occurs downstream of the GH31 catalytic TIM barrel domain (Pfam:PF01055) and the proximal C-terminal domain (Pfam:PF21365). GH31 enzymes containing this domain include alpha-xylosidases involved in xyloglucan saccharification [1], alpha-glucosidases, and glucosidase II alpha subunits. In Saccharomyces cerevisiae, the glucosidase II alpha subunit ROT2 (Swiss:P38138) cleaves the two innermost alpha-1,3-linked glucose residues from the oligosaccharide precursor of immature glycoproteins in the endoplasmic reticulum (EC:3.2.1.207) [3]. Structural studies of the Chaetomium thermophilum glucosidase II alpha subunit show that the distal C-terminal domain stabilises the catalytic beta8-alpha8 barrel domain [2].
Domain
A, B
PF01055Glycosyl hydrolases family 31 TIM-barrel domain (Glyco_hydro_31_2nd)Glycosyl hydrolases family 31 TIM-barrel domainGlycosyl hydrolases are key enzymes of carbohydrate metabolism. Family 31 comprises of enzymes that are, or similar to, alpha- galactosidases. This entry corresponds to the second domain of family 31 enzymes and adopts a TIM-barrel fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Alpha-glucosidase II -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR000322Glycoside hydrolase family 31, TIM barrel domainDomain
A, B
IPR033403Domain of unknown function DUF5110Domain
A, B
IPR048395Glycosyl hydrolase family 31, C-terminal domainDomain
A, B
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B
IPR013780Glycosyl hydrolase, all-betaHomologous Superfamily
A, B
IPR025887Glycoside hydrolase family 31, N-terminal domainDomain
A, B
IPR011013Galactose mutarotase-like domain superfamilyHomologous Superfamily