5DJB | pdb_00005djb

Structure of the Haliangium ochraceum BMC-H shell protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d5djbb_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
D	d5djbd_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
E	d5djbe_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
G	d5djbg_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
H	d5djbh_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
F	d5djbf_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
C	d5djbc_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)
A	d5djba_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Haliangium ochraceum DSM 14365 ) [TaxId: 502025 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CcmK-like	8081332	3001326	SCOP2B (2022-06-29)
A	SCOP2 Family	CcmK-like	8081331	4003707	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CcmK-like	8081332	3001326	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Tor_FN3_2nd	e5djbB1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)
D	Tor_FN3_2nd	e5djbD1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)
E	Tor_FN3_2nd	e5djbE1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)
G	Tor_FN3_2nd	e5djbG1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)
H	Tor_FN3_2nd	e5djbH1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)
F	Tor_FN3_2nd	e5djbF1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)
C	Tor_FN3_2nd	e5djbC1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)
A	Tor_FN3_2nd	e5djbA1	A: a/b three-layered sandwiches	X: Carbon-nitrogen hydrolase-like	H: HTH	T: winged helix domain	F: Tor_FN3_2nd	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
D	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
E	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
G	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
H	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
F	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
C	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
A	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Microcompartments protein	-	-	intracellular organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050575	Bacterial microcompartment shell	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR037233	CcmK-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.