5DAR
CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF00466 | e5darB1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
B | F_UNCLASSIFIED | e5darB2 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: F_UNCLASSIFIED | ECOD (1.6) |
E | PF00466 | e5darE2 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
E | PF17777 | e5darE1 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: PF17777 | ECOD (1.6) |
C | PF00298 | e5darC2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
C | PF03946 | e5darC1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
F | PF00298 | e5darF1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
F | PF03946 | e5darF2 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E | 3.30.70.1730 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Ribosomal protein L10, N-terminal RNA-binding domain | CATH (4.3.0) |
E | 3.90.105.20 | Alpha Beta | Alpha-Beta Complex | Molybdopterin biosynthesis moea protein, domain 2 | Ribosomal protein L10, N-terminal fragment, domain II | CATH (4.3.0) |
C | 3.30.1550.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal protein L11, N-terminal domain | Ribosomal protein L11/L12, N-terminal domain | CATH (4.3.0) |
F | 3.30.1550.10 | Alpha Beta | 2-Layer Sandwich | Ribosomal protein L11, N-terminal domain | Ribosomal protein L11/L12, N-terminal domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain | |
PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family | |
PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain | |
PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043141 | Large ribosomal subunit protein uL10-like domain superfamily | Homologous Superfamily | |
IPR001790 | Large ribosomal subunit protein uL10 | Family | |
IPR043164 | Large ribosomal subunit protein uL10-like, insertion domain superfamily | Homologous Superfamily | |
IPR040637 | Large ribosomal subunit protein uL10-like, insertion domain | Domain | |
IPR022909 | Large ribosomal subunit protein uL10, archaea | Family | |
IPR020785 | Large ribosomal subunit protein uL11, conserved site | Conserved Site | |
IPR020783 | Large ribosomal subunit protein uL11, C-terminal | Domain | |
IPR000911 | Ribosomal protein uL11 | Family | |
IPR036769 | Large ribosomal subunit protein uL11, C-terminal domain superfamily | Homologous Superfamily | |
IPR020784 | Large ribosomal subunit protein uL11, N-terminal | Domain | |
IPR036796 | Large ribosomal subunit protein uL11, N-terminal domain superfamily | Homologous Superfamily |