5DA5 | pdb_00005da5

Crystal structure of Rhodospirillum rubrum Rru_A0973

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d5da5c_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Z	d5da5z_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Y	d5da5y_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
X	d5da5x_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
W	d5da5w_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
V	d5da5v_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
U	d5da5u1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
U	d5da5u2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
T	d5da5t1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
T	d5da5t2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
S	d5da5s_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
R	d5da5r_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
Q	d5da5q_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
P	d5da5p1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
P	d5da5p2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
O	d5da5o_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
N	d5da5n1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
N	d5da5n2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
M	d5da5m_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
L	d5da5l1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
L	d5da5l2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
K	d5da5k1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
K	d5da5k2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
J	d5da5j1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
J	d5da5j2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
I	d5da5i1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
I	d5da5i2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
H	d5da5h1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
H	d5da5h2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
G	d5da5g1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
G	d5da5g2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
F	d5da5f1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
F	d5da5f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
E	d5da5e_	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
D	d5da5d1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
D	d5da5d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
B	d5da5b1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
B	d5da5b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
A	d5da5a1	All alpha proteins	Ferritin-like	Ferritin-like	automated matches	automated matches	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)
A	d5da5a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Rhodospirillum rubrum ) [TaxId: 1085 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AA [auth a]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)
B	SCOP2 Family	half-ferritin	8086899	4001224	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Ferritin-like	8086900	3001658	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Ferritin-like	8086900	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AA [auth a]	Peripla_BP_6	e5da5a1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
C	Peripla_BP_6	e5da5C1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
Z	Peripla_BP_6	e5da5Z1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
Y	Peripla_BP_6	e5da5Y1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
X	Peripla_BP_6	e5da5X1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
W	Peripla_BP_6	e5da5W1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
V	Peripla_BP_6	e5da5V1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
U	Peripla_BP_6	e5da5U1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
T	Peripla_BP_6	e5da5T1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
S	Peripla_BP_6	e5da5S1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
R	Peripla_BP_6	e5da5R1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
Q	Peripla_BP_6	e5da5Q1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
P	Peripla_BP_6	e5da5P1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
O	Peripla_BP_6	e5da5O1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
N	Peripla_BP_6	e5da5N1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
M	Peripla_BP_6	e5da5M1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
L	Peripla_BP_6	e5da5L1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
K	Peripla_BP_6	e5da5K1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
J	Peripla_BP_6	e5da5J1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
I	Peripla_BP_6	e5da5I1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
H	Peripla_BP_6	e5da5H1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
G	Peripla_BP_6	e5da5G1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
F	Peripla_BP_6	e5da5F1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
E	Peripla_BP_6	e5da5E1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
DA [auth d]	Peripla_BP_6	e5da5d1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
D	Peripla_BP_6	e5da5D1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
CA [auth c]	Peripla_BP_6	e5da5c1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
BA [auth b]	Peripla_BP_6	e5da5b1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
B	Peripla_BP_6	e5da5B1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)
A	Peripla_BP_6	e5da5A1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Peripla_BP_6	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
AA [auth a]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
C	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
Z	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
Y	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
X	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
W	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
V	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
U	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
T	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
S	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
R	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
Q	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
P	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
O	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
N	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
M	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
L	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
K	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
J	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
I	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
H	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
G	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
F	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
E	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
DA [auth d]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
D	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
CA [auth c]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
BA [auth b]	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
B	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)
A	6.10.140.1960	Special	Helix non-globular	Helix Hairpins	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	PF22277	EncFtn-like (EncFtn-like)	EncFtn-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	Rru_A0973	oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity cation binding ion binding binding metal ion binding small molecule binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR030907	Encapsulin-associated ferritin-like	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR054581	Encapsulated ferritin-like	Family