5CX8 | pdb_00005cx8

Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BKRIT1_FRMD8_FERM_Ce5cx8B1 A: alpha bundlesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F: KRIT1_FRMD8_FERM_CECOD (develop294)
AKRIT1_FRMD8_FERM_Ce5cx8A1 A: alpha bundlesX: C-terminal additional helical subdomain in reovirus polymerase lambda3H: C-terminal additional helical subdomain in reovirus polymerase lambda3T: C-terminal additional helical subdomain in reovirus polymerase lambda3F: KRIT1_FRMD8_FERM_CECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF07980SusD family (SusD_RagB)SusD family- Repeat
A, B
PF14322Starch-binding associating with outer membrane (SusD-like_3)Starch-binding associating with outer membrane- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Lipoprotein RagB- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR012944RagB/SusD domainDomain
A, B
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A, B
IPR033985SusD-like, N-terminalDomain