Annotations: 5CW4

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	BRCC36 C-terminal domain	8058194	4007682	SCOP2 (2022-06-29)
A	SCOP2 Family	JAB1/Mov34/MPN/PAD-1/JAMM domain-like	8048969	4006292	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	BRCC36 C-terminal domain	8058195	3002390	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	JAB1/MPN domain-like	8053275	3001105	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	JAB1/MPN domain-like	8053275	3001105	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	BRCC36 C-terminal domain	8058195	3002390	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PF22299	e5cw4B1	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF22299	ECOD (1.6)
B	PF21125	e5cw4B2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF21125	ECOD (1.6)
D	PF22299	e5cw4D1	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF22299	ECOD (1.6)
D	PF21125	e5cw4D2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF21125	ECOD (1.6)
A	PF18110	e5cw4A2	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF18110	ECOD (1.6)
A	PF01398	e5cw4A1	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398	ECOD (1.6)
C	PF18110	e5cw4C1	A: alpha bundles	X: BRCC36 C-terminal helical domain (From Topology)	H: BRCC36 C-terminal helical domain (From Topology)	T: BRCC36 C-terminal helical domain	F: PF18110	ECOD (1.6)
C	PF01398	e5cw4C2	A: a+b three layers	X: Cytidine deaminase-like (From Topology)	H: Cytidine deaminase-like (From Topology)	T: Cytidine deaminase-like	F: PF01398	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D	PF21125	BRCA1-A complex subunit Abraxas 1 MPN domain (MPN_2A_DUB_like)	BRCA1-A complex subunit Abraxas 1 MPN domain	This entry represents the MPN domain from the Abraxas protein [1-3]. Abraxas is a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substra ...	This entry represents the MPN domain from the Abraxas protein [1-3]. Abraxas is a component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substrates.	Domain
A, C	PF18110	BRCC36 C-terminal helical domain (BRCC36_C)	BRCC36 C-terminal helical domain	This is the C-terminal domain of BRCC36, a Zn2+ dependent deubiquitinating enzyme, present in Camponotus floridanus. BRCC36 hydrolyzes lysine linked ubiquitin chains as part of macromolecular complexes that participate in either interferon signalling ...	This is the C-terminal domain of BRCC36, a Zn2+ dependent deubiquitinating enzyme, present in Camponotus floridanus. BRCC36 hydrolyzes lysine linked ubiquitin chains as part of macromolecular complexes that participate in either interferon signalling or DNA-damage recognition. The domain consists of 2 non canonical helices. The domain interacts hydrophobically with helices alpha 4 and alpha 5 of KIAA0157 in the form of a coiled coil helical bundle. This interaction helps establish the association of BRCC36 with KIAA0157, a pseudo-DUB MPN- protein that is essential for the activity of BRCC36 [1].	Domain
A, C	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D	Protein FAM175B	-	cellular process cell cycle cell division	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle cytoplasm membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A, C	BRCA1/BRCA2-containing complex subunit 3	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity cation binding ion binding binding metal ion binding small molecule binding metal-dependent deubiquitinase activity cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity cation binding ion binding binding metal ion binding small molecule binding metal-dependent deubiquitinase activity metallopeptidase activity	cellular process cell cycle cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus regulation of cellular process positive regulation of signal transduction pattern recognition receptor signaling pathway response to stimulus regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly regulation of signal transduction response to biotic stimulus cell communication cellular process cell cycle cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus regulation of cellular process positive regulation of signal transduction pattern recognition receptor signaling pathway response to stimulus regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly regulation of signal transduction response to biotic stimulus cell communication cellular component biogenesis immune response-activating signaling pathway cellular component assembly inflammasome-mediated signaling pathway positive regulation of immune response canonical inflammasome complex assembly regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process positive regulation of pattern recognition receptor signaling pathway immune response response to other organism regulation of innate immune response response to external stimulus positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway NLRP3 inflammasome complex assembly positive regulation of defense response activation of innate immune response regulation of immune response inflammatory response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of cellular component organization positive regulation of cellular component organization regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress innate immune response protein-containing complex assembly response to external biotic stimulus cellular component organization or biogenesis positive regulation of cellular process regulation of signaling positive regulation of innate immune response defense response protein-containing complex organization positive regulation of cellular component biogenesis biological regulation defense response to symbiont regulation of cellular component biogenesis immune system process regulation of cell communication positive regulation of signaling primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response metabolic process macromolecule metabolic process DNA repair cell division organonitrogen compound metabolic process proteolysis protein metabolic process	intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle protein-containing complex BRISC complex nucleus intracellular organelle intracellular anatomical structure cytoskeleton spindle organelle intracellular non-membrane-bounded organelle spindle pole cellular anatomical entity microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle protein-containing complex BRISC complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cytoplasm BRCA1-A complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR037518	MPN domain	Domain
B, D	IPR023238	FAM175 family	Family
A, C	IPR033860	Brcc36 isopeptidase	Family
A, C	IPR037518	MPN domain	Domain
A, C	IPR040749	BRCC36, C-terminal helical domain	Domain
A, C	IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.