5CV0 | pdb_00005cv0

Crystal structure of N-terminal truncated human B12-chaperone CblD (108-296)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	CblD-like	8051694	4007477	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	FMN-dependent nitroreductase-like	8092564	3001947	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	FMN-dependent nitroreductase-like	8092564	3001947	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Zeta_toxin	e5cv0B1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Nucleoplasmin-like/VP (viral coat and capsid proteins)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Zeta_toxin	ECOD (v294.1)
A	DHDPS	e5cv0A1	A: a/b three-layered sandwiches	X: Cysteine proteinases-like	H: Cysteine proteinases	T: Cysteine proteinases	F: DHDPS	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Methylmalonic aciduria and homocystinuria type D protein, mitochondrial	molecular carrier activity	cobalamin metabolic process tetrapyrrole metabolic process metabolic process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR019362	Methylmalonic aciduria and homocystinuria type D protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9H3L0	methylmalonic acidemia homocystinuria methylmalonic aciduria and homocystinuria type cblD Epileptic encephalopathy inborn errors of metabolism plasma cell myeloma inherited organic acidemia ovarian cancer psoriasis intellectual disability pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.