5BV0 | pdb_00005bv0

Crystal Structure of a Complex Between the SNARE Nyv1 and the HOPS Vps33-Vps16 subcomplex from Chaetomium thermophilum


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BGp6-like_1ste5bv0B1 A: a/b three-layered sandwichesX: HTHH: Baseplate wedge protein gp6 helical domainT: Baseplate wedge protein gp6 helical domainF: Gp6-like_1stECOD (v294.1)
ADHFR_1e5bv0A2 A: a/b three-layered sandwichesX: Rossmann-likeH: 26S proteasome subunit Rpn2 C-terminal domainT: 26S proteasome subunit Rpn2 C-terminal domainF: DHFR_1ECOD (v294.1)
ARibosomal_L30,Ribosomal_L30_Ne5bv0A3 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: Ribosomal_L30,Ribosomal_L30_NECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00957Synaptobrevin (Synaptobrevin)SynaptobrevinThe entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein ...The entry represents the entire v-SNARE coiled-coil homology domain. The process of vesicular membrane fusion in eukaryotic cells depends on a conserved fusion machinery called SNARE (soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors). In the process of vesicle docking, proteins present on the vesicle (v-SNARE) have to bind to their counterpart on the target membrane (t-SNARE) to form a core complex that can then recruit the soluble proteins NSF and SNAP This so called fusion complex can then disassemble after ATP hydrolysis mediated by the ATPase NSF in a process that leads to membrane fusion and the release of the vesicle contents. v-SNAREs include proteins homologous to synaptobrevi [1, 2, 3].
Domain
PF00995Sec1 family (Sec1)Sec1 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SNARE domain-
Vps16
SM (Sec1/Munc18-like) protein -