Crystal structure of an antigenic outer membrane protein ST50 from Salmonella Typhi
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d5bunc_ | Membrane and cell surface proteins and peptides | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | automated matches | (Salmonella enterica subsp. enterica serovar Typhi ) [TaxId: 90370 ], | SCOPe (2.08) |
| B | d5bunb_ | Membrane and cell surface proteins and peptides | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | automated matches | (Salmonella enterica subsp. enterica serovar Typhi ) [TaxId: 90370 ], | SCOPe (2.08) |
| A | d5buna_ | Membrane and cell surface proteins and peptides | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | automated matches | (Salmonella enterica subsp. enterica serovar Typhi ) [TaxId: 90370 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Outer membrane efflux proteins (OEP) | 8071270 | 3000246 | SCOP2B (2022-06-29) |
| B | SCOP2 Family | Outer membrane efflux proteins (OEP) | 8071269 | 4003096 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Outer membrane efflux proteins (OEP) | 8071270 | 3000246 | SCOP2 (2022-06-29) |
| A | SCOP2B Superfamily | Outer membrane efflux proteins (OEP) | 8071270 | 3000246 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | PI3_PI4_kinase | e5bunC1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like | T: Restriction endonuclease-like | F: PI3_PI4_kinase | ECOD (v294.1) |
| B | PI3_PI4_kinase | e5bunB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like | T: Restriction endonuclease-like | F: PI3_PI4_kinase | ECOD (v294.1) |
| A | PI3_PI4_kinase | e5bunA1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like | T: Restriction endonuclease-like | F: PI3_PI4_kinase | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 1.20.1600.10 | Mainly Alpha | Up-down Bundle | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
| B | 1.20.1600.10 | Mainly Alpha | Up-down Bundle | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
| A | 1.20.1600.10 | Mainly Alpha | Up-down Bundle | Outer membrane efflux proteins (OEP) | Outer membrane efflux proteins (OEP) | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Outer membrane protein |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR058622 | Outer membrane channel protein TolC | Family | |
| IPR003423 | Outer membrane efflux protein | Family | |
| IPR010130 | Type I secretion outer membrane protein, TolC | Family | |
| IPR051906 | Outer membrane protein TolC-like | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Beta-barrel transmembrane | Outer membrane efflux proteins (n=12,S=18) trimeric | Outer membrane efflux proteins |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Beta-Barrel Membrane Proteins: Monomeric/Dimeric | ST50 discharge outer membrane protein |
