5BPK | pdb_00005bpk

Varying binding modes of inhibitors and structural differences in the binding pockets of different gamma-glutamyltranspeptidases

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TFIIE_beta	e5bpkD1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
B [auth C]	TFIIE_beta	e5bpkC1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
C [auth B]	TFIIE_beta	e5bpkB1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)
A	TFIIE_beta	e5bpkA1	A: a/b three-layered sandwiches	X: Transmembrane heme-binding four-helical bundle	H: Baseplate wedge protein gp7 helical domain	T: Baseplate wedge protein gp7 helical domain	F: TFIIE_beta	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth B]	1.10.246.130	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
A	1.10.246.130	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C], D	PF01019	Gamma-glutamyltranspeptidase (G_glu_transpept)	Gamma-glutamyltranspeptidase		Domain
A, C [auth B]	PF01019	Gamma-glutamyltranspeptidase (G_glu_transpept)	Gamma-glutamyltranspeptidase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	Gamma-glutamyltranspeptidase (Ggt)	cysteine-type peptidase activity peptidase activity omega peptidase activity catalytic activity, acting on a protein hydrolase activity gamma-glutamyl-peptidase activity catalytic activity glutathione gamma-glutamate hydrolase threonine-type peptidase activity	multicellular organismal process regulation of cellular process positive regulation of interleukin-8 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process regulation of biological process multicellular organismal process regulation of cellular process positive regulation of interleukin-8 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process regulation of biological process biological regulation interleukin-8 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process regulation of interleukin-8 production glutathione metabolic process modified amino acid biosynthetic process modified amino acid metabolic process sulfur compound biosynthetic process peptide biosynthetic process glutathione biosynthetic process sulfur compound metabolic process nonribosomal peptide biosynthetic process peptide metabolic process regulation of cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition negative regulation of biological process negative regulation of cell cycle cell cycle phase transition regulation of cell cycle G1/S phase transition negative regulation of cell cycle process cell cycle G1/S phase transition negative regulation of cellular process negative regulation of cell cycle phase transition cell cycle regulation of cell cycle cell cycle process negative regulation of lymphocyte proliferation regulation of leukocyte activation regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of immune system process immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation sulfur compound catabolic process glutathione catabolic process catabolic process modified amino acid catabolic process	-
A, C [auth B]	Gamma-glutamyltranspeptidase (Ggt)	cysteine-type peptidase activity peptidase activity omega peptidase activity catalytic activity, acting on a protein hydrolase activity gamma-glutamyl-peptidase activity catalytic activity glutathione gamma-glutamate hydrolase threonine-type peptidase activity	multicellular organismal process regulation of cellular process positive regulation of interleukin-8 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process regulation of biological process multicellular organismal process regulation of cellular process positive regulation of interleukin-8 production positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process regulation of multicellular organismal process positive regulation of cellular process regulation of biosynthetic process regulation of biological process biological regulation interleukin-8 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process regulation of interleukin-8 production glutathione metabolic process modified amino acid biosynthetic process modified amino acid metabolic process sulfur compound biosynthetic process peptide biosynthetic process glutathione biosynthetic process sulfur compound metabolic process nonribosomal peptide biosynthetic process peptide metabolic process regulation of cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition negative regulation of biological process negative regulation of cell cycle cell cycle phase transition regulation of cell cycle G1/S phase transition negative regulation of cell cycle process cell cycle G1/S phase transition negative regulation of cellular process negative regulation of cell cycle phase transition cell cycle regulation of cell cycle cell cycle process negative regulation of lymphocyte proliferation regulation of leukocyte activation regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of immune system process immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation sulfur compound catabolic process glutathione catabolic process catabolic process modified amino acid catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR043137	Gamma-glutamyltranspeptidase, small subunit, C-terminal domain	Homologous Superfamily
B [auth C], D	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
B [auth C], D	IPR000101	Gamma-glutamyltranspeptidase	Family
B [auth C], D	IPR051792	Gamma-glutamyltransferase, bacteria	Family
B [auth C], D	IPR043138	Gamma-glutamyltranspeptidase, large subunit	Homologous Superfamily
B [auth C], D	IPR055262	Gamma-glutamyltranspeptidase, conserved site	Conserved Site
A, C [auth B]	IPR043137	Gamma-glutamyltranspeptidase, small subunit, C-terminal domain	Homologous Superfamily
A, C [auth B]	IPR029055	Nucleophile aminohydrolases, N-terminal	Homologous Superfamily
A, C [auth B]	IPR000101	Gamma-glutamyltranspeptidase	Family
A, C [auth B]	IPR051792	Gamma-glutamyltransferase, bacteria	Family
A, C [auth B]	IPR043138	Gamma-glutamyltranspeptidase, large subunit	Homologous Superfamily
A, C [auth B]	IPR055262	Gamma-glutamyltranspeptidase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.